Scaffold Ga0104986_1593

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1593
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 18679
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (75.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004450	Metagenome	437	Y
F024742	Metagenome / Metatranscriptome	204	Y
F042219	Metagenome	158	N
F066591	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_159313	F024742	AGGAG	MNNETQRIMEALMLIYGRDLQAATITVLLKDGDTAVRFITLTIPQRETHDLHKI*
Ga0104986_159317	F066591	GAG	MLALWRAAPFFGLGIPLLQGAEMDDSDDYELASLMYGIAITLLLLFALVGIAGLAGFIWGML*
Ga0104986_159319	F004450	N/A	MNWVAAALIALVMSAAYLLDGPSEHDARVDTKEELIQKLCGENAAWKLLADGSIQCFTHRGFKTRKVQL*
Ga0104986_159329	F042219	AGG	MVKRQTVVVEESSFMLDEFQVKAESLVAQLERVKQEHDARWGIKRIEMLVDANLRVKLHQQLERVYNAQRDRDIEKMEKAVAGMIKGYGVLDAWAEDNNIEQKPDINAVEWVMQDKSIMVVVQTQNDAIYYQQFRPELSNRHIWSMEELELLLESEVIKDIMKAKALLPGTKMTRIAAGGGVTGFDDLPDCDIDLTGELSNPLFNFQHAKMMKAPASR*