Scaffold Ga0104986_1587

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1587
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 18519
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (87.88%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039106	Metagenome / Metatranscriptome	164	N
F088765	Metagenome / Metatranscriptome	109	N
F099211	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_158712	F099211	AGTAGG	MKGLFEMYPDDDFLPNEAFDFTKGEYEDMQEDHNIADVLNRFVRLCQEYGFYFMMRQLTKALNAKGFNV*
Ga0104986_158715	F039106	GGA	MIQLYFNGKPCEIVSRDSADGTVCIRYAADNPNWPFPNYTWVDPKTLSKLRQSKHAKRLEALQGIEDALM*
Ga0104986_15874	F088765	GGAG	MKQTLRDMMSQCWDNRMDGERFDFEKFAEMVAFQASEERLDRCIEALERRGYTDAADIIRGEG*