Scaffold Ga0104986_1582

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1582
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 18256
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002044	Metagenome / Metatranscriptome	599	Y
F007469	Metagenome / Metatranscriptome	350	Y
F007522	Metagenome / Metatranscriptome	349	Y
F048985	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_158218	F048985	AGCAG	MPNTSQVTVTTTATLLVTANRADQSVYLHSSSGTIYVGGAGVTTSTGYRMDNGDKLTMQLSDNESLYGIASSGTSTMMVMATVN*
Ga0104986_158222	F002044	N/A	MANTRKSPKRKKINRRIVRHSPEPLSKLDQHYTALHECYKAARKAGFTPEHAFWLMTEHKTFPDWIVGDGGIIPSIDPTDDEDND*
Ga0104986_158224	F007522	AGG	MSLKEAGLWWVASMVTIIVAYGVLQNAKQTHYWRGRKDGWDMHRRMIDAKTDANNN*
Ga0104986_158227	F007469	AGGGGG	MMGYLEIIDGSGLKATFDDDGVSVIPTGLAEKCDSCNDDRLLHEGDLLRCYKCGCINRIP