Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1579 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1579 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	18205
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (78.95%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

18205

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (78.95%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F003066	Metagenome / Metatranscriptome	509	Y
F003522	Metagenome	481	Y
F007861	Metagenome / Metatranscriptome	343	Y
F011384	Metagenome / Metatranscriptome	291	Y
F019123	Metagenome / Metatranscriptome	231	Y
F051928	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_157920	F051928	AGGAG	MTAYQIRKQWRVKLHAKRCKDNDQSVERYHHDAAVLNRAMDRYKIEGRRATW*
Ga0104986_157925	F003522	N/A	VKEKILAYLTEPRTINDIAEHIQSNYPITKNILVEMRDANVIHAYKDNQNRLMHYYVPQPHPLQTIFGHTVNFTDDQIKGVISHNADDAKHNLQHKTTQETFGESVAYTLTRYD*
Ga0104986_15793	F002037	AGGA	MMSKVYWLFIVVMAALAIFWTEETFSQTTTILAPDGSVTVCQVGSNGIVICV*
Ga0104986_157936	F007861	AGGAG	MVDKSLEEVKRGEQAAVILENPVYQEAIQKVKDNIVTSMTTSPLGDEKTHNRLVIALQLLNQIDKQLTDVMNTGKLAKLQTDTPRFKVFG*
Ga0104986_15795	F011384	GGAG	MYTKLDDQRQAKFIVKYMQEHPSCSIKDIVQQCVTNRTRLKYLESQGYFSLPKLTHQDVLDRRFKNRHYVSVSVGREYGKWTGY*
Ga0104986_15796	F019123	N/A	MDSKPLTQEEIIKIYKAAFGNGNAVLTLDRIFKFARLLEQAHGVKDVH*
Ga0104986_15797	F003066	N/A	MKKEPVAWLYEEFDVKSGDLKKSYLWSFHPKELSYLNDLKNATHHIKITPLFRGDKIEEYKSMNKYSEETQRLIESNNGL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1579

Overview

Ecosystem & Geography

Associated Families

Sequences