Basic Information | |
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Taxon OID | 3300007734 Open in IMG/M |
Scaffold ID | Ga0104986_1579 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 18205 |
Total Scaffold Genes | 38 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (78.95%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002037 | Metagenome / Metatranscriptome | 600 | Y |
F003066 | Metagenome / Metatranscriptome | 509 | Y |
F003522 | Metagenome | 481 | Y |
F007861 | Metagenome / Metatranscriptome | 343 | Y |
F011384 | Metagenome / Metatranscriptome | 291 | Y |
F019123 | Metagenome / Metatranscriptome | 231 | Y |
F051928 | Metagenome | 143 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0104986_157920 | F051928 | AGGAG | MTAYQIRKQWRVKLHAKRCKDNDQSVERYHHDAAVLNRAMDRYKIEGRRATW* |
Ga0104986_157925 | F003522 | N/A | VKEKILAYLTEPRTINDIAEHIQSNYPITKNILVEMRDANVIHAYKDNQNRLMHYYVPQPHPLQTIFGHTVNFTDDQIKGVISHNADDAKHNLQHKTTQETFGESVAYTLTRYD* |
Ga0104986_15793 | F002037 | AGGA | MMSKVYWLFIVVMAALAIFWTEETFSQTTTILAPDGSVTVCQVGSNGIVICV* |
Ga0104986_157936 | F007861 | AGGAG | MVDKSLEEVKRGEQAAVILENPVYQEAIQKVKDNIVTSMTTSPLGDEKTHNRLVIALQLLNQIDKQLTDVMNTGKLAKLQTDTPRFKVFG* |
Ga0104986_15795 | F011384 | GGAG | MYTKLDDQRQAKFIVKYMQEHPSCSIKDIVQQCVTNRTRLKYLESQGYFSLPKLTHQDVLDRRFKNRHYVSVSVGREYGKWTGY* |
Ga0104986_15796 | F019123 | N/A | MDSKPLTQEEIIKIYKAAFGNGNAVLTLDRIFKFARLLEQAHGVKDVH* |
Ga0104986_15797 | F003066 | N/A | MKKEPVAWLYEEFDVKSGDLKKSYLWSFHPKELSYLNDLKNATHHIKITPLFRGDKIEEYKSMNKYSEETQRLIESNNGL* |
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