Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1565 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1565 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	17712
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (57.58%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

17712

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (57.58%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F002044	Metagenome / Metatranscriptome	599	Y
F004599	Metagenome / Metatranscriptome	431	N
F007469	Metagenome / Metatranscriptome	350	Y
F007522	Metagenome / Metatranscriptome	349	Y
F020681	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_156517	F000468	N/A	MTAFSPVWKLTVNGTDYTNVTIANLSHRSGRTNIYTQPSASYIQAQIIAFNTTTYNFAINDGLTLQIKNGAGTYVSLFGGNITDITTEVGATGSAATEIRYTLIALGSLAKLQKAIFNETLAQDEDGNQIYATLKNTLLNSWNEVSATATWATYSATETWANAQDIGLGEIDMPGLYTMENRAAVADTVYNVAAQIANSAFGYLYEDNQGNIGYADADHRQNYLLTYGYTDLNANEALGKGLKTTTRSGDIRNDIYINYGNNYGSQKTATSTASIALYGYKAETIQSNLHDAVDAQAVADRYISQRAYPQPIFDSITFPITSSELTDANRNALLSVFIGMPVNIKNLPNQISAGEFQGYVEGWSWSVSYNQLFLNLTVSPVSFSQVAMRWNTTPVTEAWNTLSNTLTWEYATIVA*
Ga0104986_15652	F004599	GAG	MMAFNLDDYEDVATLNKWFIANYPMGRSDISVISHDPVNGYVLVQATLWRDSKDSAPAASNIAFGSRETFMPNMKKWYVEDTASSSLGRAIILLKGSNKTATKDDMRKVDDAPIKNIYGKSGNSQVIEMALRKSFADDVKPTSEPATWSVGDVAEALSTKPKQQECLHGLMILKEGTAKTGKPYYGYVCSAPKGEQCDAKWAVTAANGSWFFREEE*
Ga0104986_156523	F002044	N/A	MANTRKPIKRKKINRRVVRQSPEPLSKIDQHYMALHECYKAARKAGFTPEHAFWLMTEHKTFPDWIVGDGGIIPSIDPTDDEDDD*
Ga0104986_156525	F007522	AGG	MYAQMVCVYVGSDMTLKEAGLLWVATMVAFIWAYGIHQNAKQTHYWRGRKDGWNMHRRMIDSKTKSDEVFDYDKN*
Ga0104986_156528	F007469	AGGAGG	MGELQIIDGSGLTATFTDDGVKVEPSIVVCDVCNDDRLLHEGDLLRCYVCHAINRIP*
Ga0104986_15654	F020681	AGGA	MPKFRCNFCSANTEFMWLNKYQTAAGFRVFQCLKCCAVGTKNLAEATDTQEPVIRCEQCGSWQFVDQQCHTCALVRSK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1565

Overview

Ecosystem & Geography

Associated Families

Sequences