Scaffold Ga0104986_1564

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1564
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 17624
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F004430	Metagenome / Metatranscriptome	438	Y
F005452	Metagenome / Metatranscriptome	400	N
F016529	Metagenome	246	Y
F029109	Metagenome	189	Y
F047681	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_156413	F004430	GGAGG	MATGAQVLSYLLPNAQWYLVGDDFTGITFIAGGTITKEQFEAGFAQYDAWKAEQEAKAATDKAALLAKLGITADEAKLLLS*
Ga0104986_156418	F029109	GGAG	MAFKATKGQGSFRIEVEPYELKNLISTLNSLDKETQGRVRDAAQPLSKRLAGQLMMFGGSSPTPQTKLVLLSMLTPRDRLIRVDIGGSKKVGRPYGGTASKSGKGNKVGRSAAPAGALLWGSEYGSHSGVDRAGRKYTNRFKAPQNRLGYWINDAVDFYTPVVAKEYIAIVQGIINDLRLN*
Ga0104986_156421	F005452	GAG	MTIEADVRSPLQSTLSTIAANVYNGIPEAMTSPSIVLVPGSPYLESTLINGSTTKVKINFQVTGVVGYSSNAAALTNLEDLMISIISTMPGGYVVGDVSSPTPLEVGTGKFLTSDLQVSTYYTD*
Ga0104986_156422	F047681	N/A	VVEQKKGTEMPQIVTAGELRSILGVSVSLYSDVYLEQMIDSAELTILPLLTGYQSAVTSVFVENSIAYYTTQRVNYFVPGQSVVITGCGDYDATVTVTDDRISPFVFTSATGEADSTYTIPIIPAGLACIDGATAGDLYSGVAPIKSAILVVSVEVFQSVTAPGNQIMSDSFQPSPFILGRSLSSRIVGLLGPFLEVETMCL*
Ga0104986_15646	F016529	GAG	MRTLQFDCSICAKLYGDGRKMHGLTKGAELTLNEWFTQCSGCGAFSIKIIDDEMVKEL*
Ga0104986_15647	F000903	GGA	MISRDEEIKCLLAAITHCKDGTPDHTTRIVRDISWIDWVAQMANAMAAEWVVAKHLDYNYQPGITWDKSKADVGDHIEVKWSINPSSALWIQESDRHDRDIAILVTGQLPKMHIVGWMPVSIAKRQRYRSTHQNNWNVPQSNLQPIETLIKSNYAHSPI*
Ga0104986_15648	F000403	N/A	MSDYIEIISRRTMTARVLKDMEVVEEYKIEQCDKCSQLKRLDPFGYQKGYDNLENIIWFCVDCR*