Scaffold Ga0104986_1561

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1561
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 17581
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (60.61%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F005528	Metagenome	397	Y
F006986	Metagenome	360	Y
F011391	Metagenome / Metatranscriptome	291	Y
F020354	Metagenome	224	Y
F021759	Metagenome	217	N
F025023	Metagenome / Metatranscriptome	203	N
F040082	Metagenome	162	N
F041650	Metagenome	159	N
F058107	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_156114	F041650	N/A	MREDIQLSLAEVQMPRTRYQLEHFVIGAHDTPEMQFVQVCRELEALHYTIKEVAMQVRKTEYEIEDLREKGDRISQVEADIKELGLERTRLVAIGAVREYDTLTEIYDAIPHFTREQIDASQPDYWQARLGRQANLQVMSGSANWAHLEALDQIGVLQPMIEAQQAKAKELQQ*
Ga0104986_156118	F020354	AGAAGG	VFAKLRDELFALGFTLGASAITIMTLSGTVQNWALFFTFLSLALHLAGVLTKDGEDDGGRSED*
Ga0104986_156119	F003378	N/A	MAKFFDLGQRLFSLFLANALPAVTTGAVIGISVGKSAIMAGAMACIKVVSALAEASTDGELSSEEIKAAFGKKK*
Ga0104986_156121	F021759	AGAAGG	MDAGLATVLAAAVATFGGIVVALMQLKGFREENKADHAIVQKRLDTVIDMVGKQGAKLTSHLDWHLTKEPTKDLPQVKQVATRKKK*
Ga0104986_156122	F006986	N/A	VTVVLVTWHDAHSGAESWINIKDLDTEPAEVQSVGFLLATSDGGKPDHVTLYQSRNEDSVDHVLHIPVGMVKHIKVLMDLQTNSPDR*
Ga0104986_156123	F005528	AGGA	MRILTAILATLTSLTMSLGIAQAVSAPAQPSHAVIALQPLWQADRLDPIQPIRYRHGDVSWLPSLAKQAGWPDQAIPQLTQIVLRESGGCPNRRGGDMVDKDCNITGVSEWNHRSDTGLLQINGVNYDTSRNKWAAICQEMNICTQPPLLDPLTNLKAGLVLYNLSGFEPWNPCNWRVCKVSTTSLP*
Ga0104986_156128	F025023	AGG	MMDVGVDRTCVLQLQSDFDSLRPHQRAMVKNIATECNEYGHSISLDQLKSHRRYQIGRGLVDLIMSDNCDELLITSLCHSIQGVLFKTAGGAIGHLDAECAEQFAVICRAIRWDEQDIVWNTSTDSFGFPKQKASK*
Ga0104986_156131	F040082	AGGAG	MTQDPYAMSQEIVELQTRVAELSVALERVTEQRDNAVDAAESLHQELEASRDRIKTLGQQLDRLRIHLQQGIEL*
Ga0104986_156132	F058107	AGGA	VITIGMDSFIVCQLCDGEVRLDTKRITGCLCDPDAPTWVGIEPDGRVLTFSQSHYEIVTDLGPRHHYD*
Ga0104986_15615	F011391	N/A	MLKLMAKYQVVEGFTVLDKQYPATIDGDEIDHLDSLLQSGRIVPVADKSTSKADKAGDK*