Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1554 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1554 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	17325
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (54.17%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

17325

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (54.17%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F020001	Metagenome / Metatranscriptome	226	Y
F025981	Metagenome	199	Y
F034542	Metagenome	174	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_155411	F025981	N/A	MINKETLDILRSIDTSLQILANSKSSNITTAFVNKKAVAARLGVTPVTIDKLIYQGITSKGSSGLVEGRHYCKLDPTESNTSNFLFDSAKVLQDAWTSFTGY*
Ga0104986_155418	F020001	N/A	MSDGKALLTIAETAELLNCSSGFVRKRIALSEANQPGGWPKSVYVNLQPNGAKSLYRVNKTALEEYLQSSSTAKVEAEETPVAAAACTF*
Ga0104986_155421	F034542	AGGTGG	VARKRGSDNFGFRDFKATNPVNQPRTIRGSDNAGELLRPLPFKRRFRPATGTKDFSLLSDYDYASLWVRWRRGYELAMYSQQAYDGLTYSFKYFVSGTPGVGTFLPGIAFMYPTTRSDMRMWMVGIRPRDSFNFLNFGYSVVSVTDYDANTYAVRLSSNFGAPISFFTGEVLSNRYNADGTEKSYGYNNYTVTAVGINGVPTAPGYLPIYNTLFLSHTNANSWAVVNSTTMAVPATGPPAVGEYLATEMRSQCTCPDFLAREGFNLYQASLRRKYPYTRVQNLDPGFYDAGPNATVRQVPSSDDPGFARTFGFIYLNEIYNIPEYTEGVYSDPNVFYYQPRWCKHIYAAMWDLQLRFGQTTTTSMWLAQPNDEPMNEYYREKFEIDLAKQTDFFRRERNLVWWQRYSPAKNDMPTHMMYPDMYNMMGKTLNFGNINSLTPMEAQNFEMYTIDEFDPFAPINFDQLQVYDGGTYANGVLVSQPVNTFVGGQYANGVLIPPAGFPSLINGGTY*
Ga0104986_155422	F001215	GAG	MASTSTNKQPCLIDRPFLRGARITSATGKCDPTNPNLTDLIQLVRVGDLPSEDAALVEDITIVSNEDYPDKSGIRTADIGLYVYAPNQAAPSTSAALMVGRFEVGLSGSTFGYPLPVQLFAVNAPVPKTGDTALIAPIQIGKGEGLYLEKGYILCAGYLGNGPTSVSGGLSSSGITIWAQGGFY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1554

Overview

Ecosystem & Geography

Associated Families

Sequences