NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1539

Scaffold Ga0104986_1539


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1539 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)16838
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (68.97%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000506Metagenome / Metatranscriptome1070Y
F000706Metagenome / Metatranscriptome926Y
F004050Metagenome / Metatranscriptome455Y
F005323Metagenome / Metatranscriptome404N
F007223Metagenome355Y
F031078Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0104986_153921F005323AGAAGGMGKLQFMNQDGEWESFPTEDEIHRSKEVIAILEEFTFTTRCCLCNEAIPYKDIKVNLANKSWSCSKCHAVNGLTKP*
Ga0104986_153924F007223N/AMGQLCHQQQKGHNMFDPSLGDLIAMIALSALYFHLGRTVGIRVGYLKGRKAVRDYYETKERVRV*
Ga0104986_153926F004050GAGMARKKVIDLDTYSQLDAYAISMHEFYKSLRRAGFAVDLCLAIITDRDAYPDWILPAIPDRVDRIPYEDDDDED*
Ga0104986_153927F000706GGAGMSQNDFFTLYFASLAVIGGLAGYVITHLLSEIKRLNSRVDEIYNILLER*
Ga0104986_153928F031078AGGTGGMEAVIYATLGLIAIPVIRAAIKSYRAKKAVADIVVDAIEAAVDTVEKK*
Ga0104986_15399F000506AGGAGMAKLKITRANGEVSEHKITPGVEYAFELKYGAGISKVLRDHERQTEIYFLAHECLRRANVTVPMFGIEFIDSLETVEVLDEEKK*
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