Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1532 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1532 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	16758
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (70.37%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

16758

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (70.37%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001459	Metagenome / Metatranscriptome	690	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003962	Metagenome / Metatranscriptome	459	Y
F004010	Metagenome / Metatranscriptome	457	Y
F073257	Metagenome / Metatranscriptome	120	N
F090072	Metagenome / Metatranscriptome	108	N
F098901	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_153211	F003962	AGAAGG	LNHDREQLKVAHKFIGLLQRENAQLHGVLRLLGQLVDDMNANCSYEVFEVQWNSLTEQVKRLSGFFESHQKALQSLHDACPSVWDEDEVDDDIQ*
Ga0104986_153213	F090072	AGGAG	MTEDEIIKAYLSRLGKKGGSVKGPQKVRPKEHYQKAVGIRWAKYRERQQTEAQASKR*
Ga0104986_153214	F098901	AGGA	MKKKIAKRKYKVEYKQTETFIVDVYANNQEQAEKLACKRLDAGDYQEMGDCEVVVNQVYDVTNTEDPFYP*
Ga0104986_153226	F001459	GGGGG	MRKLKAALAFIRDQEWVNEPKWEDEDEKAWTGLLATPTGQKLSLILLNLTLRQNASAVMKKAEALADACGYAKGFRGCVATLESLASQKLNSAIPGYGDGSDEPVAD*
Ga0104986_15323	F004010	AGGAGG	MPLGKDVSKNMSELARDNKKKGSERGAGGKPRSREQMIAIALSAAGKSKPRKFRMRSGS*
Ga0104986_15324	F002826	N/A	MQVEAKNRLKWARDCLLNARNRLAVERDRATHGRSIDIIQIITLVDAASLVCKEVMGDE*
Ga0104986_15327	F073257	AGGAG	MSDKAFTRHKFYWGEETYTLCVTQDDCWLEDGPSDISDRMLKGMDELAMENGMLPPKDLCCECWKGTYQDIVEDYHIGGTTIKDLDLHRCYRCGHTTLPWQSVEKVDKVLEAAKKPAELCPTCRKSNTVEVTGDIKMDSVCKLDGEPFTVPNITRTQCPKCKDEFFFMSELEKIEAAIQAEQKKRGLDEKPKGSYRM*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1532

Overview

Ecosystem & Geography

Associated Families

Sequences