Scaffold Ga0104986_1526

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1526
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 16633
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (65.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001834	Metagenome / Metatranscriptome	628	Y
F002357	Metagenome / Metatranscriptome	567	Y
F013618	Metagenome	269	N
F028151	Metagenome	192	Y
F055549	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_152618	F028151	GGAG	MNLYNEVKDFGYLVMWSIVVLTIVAWIVYEIRDTAFQNGYWKGRADGWNMHRRMTEIKSKSDEVFDYDKN*
Ga0104986_152620	F002357	GGAGG	MAFNLEDYEDVATLNKWFIANYPMGRSDISVISADPEKGYILIQATLWRDSKDAAPAVSNVAFGSRETYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMKKVEANPTFKEKLESRQNMYGKSGSKSAQIETILRDSFEADKSKEPVAWSVGDVVAEIGASIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKECAPKWAKLTANGKWYFEGGE*
Ga0104986_152621	F055549	N/A	MTDYFMRAICFGAITATQLTGFLTMPNYDYECPGEGEVIVMDLPMDHKTPKCQVCGAEMRRIYTAVPFILKGTGWAGKDG*
Ga0104986_15264	F001834	N/A	VPSTILSSIRTPLATALAGVAGNVYSYVPESVIPPAVVVVPDSPYLELETINKSTIHTKINFTISVAVAYNSNPASLDNIEQLIMSVLAVIPAGYIVSSVERPTVSQVGASTLLIADVRVSTYYTQTA*
Ga0104986_15269	F013618	GAGG	MSVFTPEWKLTVNGVEYTDVAIAEITHQSGRDDIYAQPLPSYLQFNLVSLNDENYNLQINDGIALQVKNSTGTFITLFGGNITDLTTEVATASSITKTYSYTILALGSLAKLPKIITDGILAQDDDGDQIYALLADLLLNNWNEVPAAETWSGYDPTTIWANAENAGLGEIDRPGQYTMENRTSKPDTIYNIASQIANSAFGVLYEDNQGRIGYADAVHRQNYLANNGYTDLSANTAIGSGLRTLVRSADVRNDIYINYGNNFGSQKTATDATSIANFGYKGETINSLLHDATDAQAVADRYIDLRAYPRPLLDRITFPITNSEIDDADRDALLGIFIGQPLRITDLPVQIAPTGQFEGYVEGWRWSTRFNELFLTINLSPIEFSQVALQWEQVSASEAWNTLSAILTWENAIGAVA*