Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1519 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1519 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	16457
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (87.10%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

16457

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (87.10%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020509	Metagenome	223	Y
F028744	Metagenome	190	Y
F031377	Metagenome	182	Y
F039000	Metagenome	164	Y
F045551	Metagenome	152	N
F055432	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_151914	F039000	AGGA	MTKNTDTTDKDIGQIMDNAQTLLNFCATTFAKPSEAWFACLVSSAILTAELSVPLEKFLEGFEHAYNDAMKAKKDMGASYDH*
Ga0104986_151915	F031377	GGGGG	MIINADNYVPVRRTNQCLTPFNTGKVQIGLLYQPPPPEMTSSEEIIQAALLGVGSIHSEPPLWPLVLGSAIVSFLLIYFAG*
Ga0104986_151916	F028744	N/A	MHEFLYECDELGLALKCFFEYEPAEVGSIEPMSGLKLEPDYPEVWTLVSVFLPNSNVDLSGVLHPDVIFRIEQDAPVYFEEMRNVV*
Ga0104986_151918	F045551	AGGAG	MTEQRELELLRPYVAACGEFVTKNAALEKQLKAIDRLLLEVLMGDIDPMQAMINRQKIKDEYEQA*
Ga0104986_15192	F020509	GAG	MTNPVTPFRNNLFGSRGMDIQSALDYAEVLINTLSSTDQVAVRTAFGVLLNTIDSAVTQSQGPTPLEEALFAIIDKRIAVLQINSQVEINASIDDWMENNLRDKMMDILANEDIDDDISNWMSNNFDITDYDVDGAIESWADNNLDEKIQEAISNLTFNVTVS*
Ga0104986_15198	F055432	GAGG	MKKLTIEQKAFLEAYDNAVASAPRDEVVRFLTVTSEERSSRAFYDSMSDIYTSIFDAWEVWNQALRFARADKGMTVGKLSAALANLPQDLPVLIWDAGTRLGIAHVDDSFVEDENPRLELNTDRDD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1519

Overview

Ecosystem & Geography

Associated Families

Sequences