Scaffold Ga0104986_1502

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1502
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 16131
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (54.84%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030426	Metagenome / Metatranscriptome	185	N
F045742	Metagenome / Metatranscriptome	152	N
F047057	Metagenome	150	Y
F057367	Metagenome	136	N
F063694	Metagenome	129	N
F072328	Metagenome	121	N
F087083	Metagenome / Metatranscriptome	110	N
F093502	Metagenome	106	N
F101138	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_15021	F047057	N/A	GSYQGAHRESFIATITGLMTDSLQGANQTTGQGTLWKTYVYDWNEVDISYGSAGSGSGVGVSDLKGARGIDYTSGVTITPPASYYPAIDFAPYRRFATGDVVMLTRCAVKSGSTYSMMYTITPVSAITPFLARLTGVTGGSGSGRYTWTGLSRIIEGTVALKTVATNLYEKNRICTPGAATAQSVNGVSWDGSNSWGHGQDTTGVTKLDLPVGAAGTGTIVVMHQGHILESTDGTTFWFYCISPITCA*
Ga0104986_150212	F045742	AGGAGG	MKSRSERKPKRKYAGRLARKHSGNGWCDIETNFPPSIVLAACDKLERESFGDGTDGVRAVTRRNARTLAALLEFTDMRVVDVGKLLHINRDKAWNLRRKWIDLEEEQRQRWLKVVFARLK
Ga0104986_150214	F093502	AGG	MEERTWEHNEKRIRQMWPNAQWGDEGNELRAIFKKHLSGLMQNHLYAAIDEVKVNFSSHQPELKWFISAYDRIVDSNRKFESGATRSADKWWVDFERPSKHTGLPYKFSTDAPDFKTAKEIAASCGGRVRNFSQVIEQDSLVHFLKAQPRADIAEAVGVLRARGIMSKDQLPSDISQWRPATVGFVTHQLQQHPKQKALA*
Ga0104986_150215	F063694	N/A	MITEMQKQLNTITVGSILAADQLRELHGAAKAAQARLRELIQLIELSCIEHIETTGHDIELVDGKRWYVGTEKKIKAIDDTMILQAVLESSGGDVMKLTTGEFGVLCANPWKNGAVKQLIGQEKFDELFLTTTVQSLETGKAAKVLKVVDPAFLKGGTQ*
Ga0104986_150216	F101138	AGGCGG	MNADELAQSIRSKHDKLETDCKQTVLAVELVALQMKLAALTARVAQLERDDHERTQTQDAKHDRVKPR*
Ga0104986_150217	F057367	GAG	MQENDSTSSGIDLMTWLNFEAAITRNPRVAQSLRDSATEIGHLRTQLKAAGINNYNELTSALRDMTRTAEVVLTTPHLQIEQRENARADMAESVRYCKKLMQS*
Ga0104986_150228	F087083	AGGAGG	LYAFIRAFFDSLLSFVGSNAGKGKQAIETDKKPEILSKAGSRIREYIRLRGVQSSGTRDGSKPDQDRT*
Ga0104986_15027	F030426	AGGA	MKPSITTTPQAAVNEILGSIAWRHLAIADLENLDEDPVDQYNRIKIREALAEAFLAGAAWGIDNKKGNQ*
Ga0104986_15029	F072328	AGGA	MISILLVAAVAACIVYIVGSSDSVDHQCGVDLKYHNNKKGNKK*