Scaffold Ga0104986_1495

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1495
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15949
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017969	Metagenome	237	Y
F025942	Metagenome	199	N
F066574	Metagenome	126	Y
F102841	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_149513	F066574	N/A	MRGLVIFLIAAFVYGATIKHECSVSEFVNLMYSTNNPKERADKAWDWLDASGPVCNKQQLTLIYKNLPTLMGSSDSMKIRARIEQLHERASK*
Ga0104986_149514	F025942	AGG	MNESWLARNIQPVTVVFLLFSYFLFAMLSIFDLETRGAYVDLLGQAMIIVITAIFAGKTVETVVDIRTNKKETSNGT*
Ga0104986_149520	F017969	GGA	MIQVIFIPILFVCMNNNCEFMQAQTWYKTEQQCRAAVDAQKENLQKMALKGGQMVTLIEGTCITLKGGML*
Ga0104986_149528	F102841	AGGA	MNAMEIIKDCEDRANAYSTNSADRLAYEVGCLRAQVRHLCQEMEYAVEEIGNIEKMLMGERA*