NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1485

Scaffold Ga0104986_1485


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1485 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)15755
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (88.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003067Metagenome / Metatranscriptome509Y
F003308Metagenome / Metatranscriptome494Y
F006789Metagenome / Metatranscriptome364Y
F008551Metagenome / Metatranscriptome331Y
F012572Metagenome279N
F046904Metagenome150N

Sequences

Protein IDFamilyRBSSequence
Ga0104986_148519F006789GGAGMALTDEEKAFLIKIGQELPVEIKETKPKETITEKDEA*
Ga0104986_148521F003308AGGAGMAATYVTAATLKASLGVGTLYDSYTWIEDTCQTAQDLINGFLWFDNAPVVGTALVSNVATVMVANPGIFTTGQSVTVAGAGSTFNGTYTITGTIPFSTGTSNILPAFNMQLNYWQFPQGYSFIQYAKVAADQNFRRVLPYGTMTGDDTKTATYANTPAINAAALMLAENIWTSRFSTQNGGTSVDGYSPSPFKMSNTLMASVRGLLAPYLSPSAMVG*
Ga0104986_148522F008551AGGMSVNVVSNLQVQVAIYGYMATIAKMPKGIIRFNFT*
Ga0104986_14855F012572AGGMSDQYELINLQAMTGKLFIDGELAAEYKVEQCDKCAMVTQLDQFGYQKSDPVENVIWFCKGCR*
Ga0104986_14857F046904AGGMNSLDLIVVGMLCLFVGLFIYAAYEMGYKVGLGEGYLRGRNIAKALKEAEAKR*
Ga0104986_14858F003067AGGMSQAQAYIALALGIATLSGLMAGLVRHLVKYYLSELRDDGNGGHNLRGRVDRIEARVDKIYEMMLEDRLAN*
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