Scaffold Ga0104986_1484

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1484
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15741
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (66.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003213	Metagenome	500	Y
F011830	Metagenome / Metatranscriptome	286	Y
F013413	Metagenome	271	N
F014620	Metagenome	261	N
F029433	Metagenome	188	Y
F032279	Metagenome	180	Y
F038591	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_148410	F003213	N/A	MNDKKINKAHRQIGDQTTKGGLLGIMIYTLSRNNVDPVLIGLIVPVAASVLAWVSTKIGDPNLACMFIPDDKDEQ*
Ga0104986_148416	F038591	GAG	MNTTTTVQVAGVKETINALKKIDPELQKQFKADATAIAKPAINAVQNKYTQVPLSGMSRDWQWHKRNPPQKIKGFDVGRAKRGVQMKFDTRRNAIGVILIIQKDQAAAIFETAGRANSSRLSQNLSDVQPGRTRIIGPAVYRARKGIEREMQQMINGVSSMIARQM*
Ga0104986_148419	F029433	GAG	MTTYIVTSDRLNGLKRGDILKDTELGTLDTDLLFLVEAGHLSVHKPTKSAKTITTDTED*
Ga0104986_148421	F011830	AGGCGG	MTTYNTASKQLLSNYACISTLEPTEIVVGQSVTVASLGSPFNGTFTVLALPQYLFTGVDGITGELYFDDETPIPNQILYACTGTDVDWVVAFDGTVAYTQTCTWVTAAQILTYLGIATATADDTTFVTQCASAANVFCYRRRQECGYFDSLTTSPSGDVTLATIMYGSALYRQRGGISDFASFDGMSQGSTNGLSPIVKQLLGVDRPQVA*
Ga0104986_14845	F014620	N/A	MPTDQLEMFTQTIGLAGISYRPAVDRNVVIVAVDAQQTSRDAAHKVKPKTGKKRQRVHAYLLGRPATDEEIETALNMSGNTVRPTRGTLVKDGLVVDSGLRRLTRAGNDAIVWRCV*
Ga0104986_14847	F013413	AGG	MTENEYDEVFSMQMEKQHEQTMARMREFKMIGEQISKMPVVSQRTLEVEVRYLMGIISELEQRCKDLESEVRRLENLISRG*
Ga0104986_14848	F032279	GAG	MPLIIKLIIAFALSAITVGVSQIPQPTPDMSDRPTDAPYALIGGLGQYQADLWRYVPPVTTTVPAQPVYKHGDCSWLPAMALQAGWASEQIPQLTKYALRESGCCPNRAGGDMVDKDCNITGVAEWSHRSDSGLLQINGVHWLPTHKYYDGLICKQMRICTQAPLLDALTNLRAARLIYSKVGWSAWGN*