Scaffold Ga0104986_1451

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1451
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15163
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002149	Metagenome / Metatranscriptome	589	Y
F003112	Metagenome / Metatranscriptome	506	N
F014487	Metagenome / Metatranscriptome	262	Y
F020886	Metagenome / Metatranscriptome	221	N
F068581	Metagenome	124	Y
F074558	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_145110	F000635	GAG	MTLTEIAQYAGEKVGKTDADTLTFLQKSASLAYRRVWDFAPWRETVTNSTYSVGTNRTITLGTNVETPLSVAYNDTEVDPIDLATIVSQDPGLLTDARTGDPDTYHFTGRNSSGVAQLNLYPRLATSGTIPLRVVEKLKCITRTNYIVDFPPSTDALGDELRLPHVHHLVLALTHADALERERQYAKAQAITQGANSDLAAMANYELSQVGGVKQITPQSLGELTIEEMFSA*
Ga0104986_145112	F002149	GAGG	MTAVEYIEKSNVPEAMWPNLADWFGWFEKQGMVGIVEDKDGIAGVALARCVKDGQEPDHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKARV*
Ga0104986_145115	F074558	AGGA	MALDPNDPLIPMPWQMDSIRAYRASKAMQAEEDALKMQRLRQEVEKGYDETPRGKASRAADLTAFLEQEKQKESGIPIGEEMGARMTAKGGPSILEATKMQGELDVESKMRQARIASIENSLAGGKSLLPTADINLGGVQRTVLAPEVGRTTADINQQIFQAQVPQLAKAYMAQGYDSDTAVKMAGSDVTKNLFKAQSSGKVVLTSNDGMSTISYTNEQAQKMWKDPSTPKFIKTQLNNFFGESEEPAAANWIKSRLGR*
Ga0104986_14515	F014487	N/A	MPIIFIALLLCSCSPKPANNNVLPRYSDMGAAEDAGNVK*
Ga0104986_14516	F003112	N/A	MKRIAMWLTNLSLRFLMTGQEYACFKEALKFAVENNNMVKETKYIGKVKHLLSVNRSIKRIVEEGRDRDEVVDAVVHLAVSLRYLEGKGRES*
Ga0104986_14517	F020886	GGAGG	VSLDEISDLKDRIATQSERLARMEERQMTLISMIERSLAFHGDVANRLGALEHLRTKVLAVAGLIGLVCSMAWDVLKNRFNG*
Ga0104986_14519	F068581	GGAGG	MKLDLSVNEINTILACLGRAPYEAVFELVEKIRSQAKEQSEAK*