Scaffold Ga0104986_1430

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1430
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14954
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (7.14%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001640	Metagenome / Metatranscriptome	659	Y
F002778	Metagenome / Metatranscriptome	530	N
F003786	Metagenome / Metatranscriptome	468	N
F008078	Metagenome / Metatranscriptome	339	Y
F009808	Metagenome	312	N
F049620	Metagenome / Metatranscriptome	146	N
F092040	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_143010	F009808	N/A	MKKNFNNQTFEWLFDDIKSTMPKIIFVGIILTYLITAALNVYFLPLPLLLSIPASLMLQFGRFAIVFIDFLNPSEKRSLYPAKVAAGATVVALLELYFSIQGQSTGAEFYAMFFFIGTIICFGYFLEIQFIEKGIEAYGIGRKTPRKRNVQKKDKEPVQMNTTVRSVQLSLAIMLVLGVTTVNGQNNHFIAYNTVGFEKIGGKLLERSYYSVADGSYTVDTITYDMLSGINLWDGYSNTTSDNCLFLTFGTLNLEYLPLIGIWRHGNKYYEYHDLLKFVSKYVKRNFLNKRINYDEICRHRSSHAAKRLGSVCY*
Ga0104986_143011	F092040	N/A	MEVEMNKYVIKYEDGKSVSVSAKNLEEALDRFKELRIETATREIRVMSSWEMFNKHKGKE
Ga0104986_143017	F002778	N/A	MKEWNSKMLEIQAFCEEVNAWITTAPSAEMLDECDEYLRQLSAYYSRYTVISGMNESIFAQMMMICIRDMPEEEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVQKLLLVTSDNYRTLLSSFRQERILVSHMAT*
Ga0104986_143021	F049620	N/A	MTPQERDEKIVGILTKCCINTLVSNLFDKNGVKVYEEFLYELNQLPVNEQDYTRCNSSHAFLHKTAVEYLQKTIVFNEEHRK*
Ga0104986_143022	F003786	N/A	MNLTKYQPHNQDEIAIIEARPNRIANIDPKDAFRNVLNVISSLFPVYGIDGDLTFYSTVTKEIVKTFGQIAANEIEIAFRLFAAQSLDLDEDVKFYGKANMHTIGKILNAYLVYRRKIIAAHDNEVAALRHNANMEEKARKSREELYANFPTMLKEFKGKDYTTVPLYWYDMCIQFGMIEYQEGEKRALWEEAQAIALKEPPESKDLMTIRSHAKKIEQGNTKRAAVIAQQLAVWRKVLKK*
Ga0104986_143025	F008078	N/A	MTQSPKEKAAELFTHYHNLIQDIGGELGQEILVSILARHCALFAVNTLLNDKHPTEDFNETYYYWTEVEHELEHYEE*
Ga0104986_14303	F001640	N/A	MKKILFFLLLPFLALSQDIVSDTVYIQKQGNIYYIVTMTTFSDSTVTGNKQILGDSLTAINALVTDAERQSNTLAIHAKPLILKSKSVKRINYYNNLHQQISGRPVYVSTALRDTTAFLGDWTLVFNGENILGEIQLNANKRFIFNPDNGKVYTISTNLLLSTFTNQISFIFNNVKYDLYKFANGKFATVDNDVRLIKKE*