Scaffold Ga0104986_1426

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1426
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14911
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001332	Metagenome	720	Y
F043388	Metagenome	156	N
F048171	Metagenome	148	Y
F067726	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_142615	F048171	AGAAG	MEIQGLESTLKTLQKIQPEVKKQFFKDAKKILAPAVKDAKELYPTDPTQEHGGELPSGLSRTWKPGGRSLFPYLQGAAISGVKIETSLSKKKDAVLTIIQKDGAATVIDYAGTKHPNPLGTALNRWAVRPRVMWRAYEQNAGNIEAEMTKSVDEVMARINALEKLVIL*
Ga0104986_142618	F067726	GGA	MDRYIITSIRVGEVGTPFIASPSDDIEWLLAGGFIQRSDTHPSKGAKLATKPDATKNTKD
Ga0104986_142619	F043388	AGG	MAYTDFLNEALDDLVTTLQTIPDLRVVNDPRNIAPPCAFVDAPSIESFNYNIVKMTFPVTLISNGPGNLDALRQLLNLTSSLVLKNIAVMSASPKVVTVGGADYAGYELIIPIQAQNG*
Ga0104986_14265	F001332	AGGAG	MDQLAEMTAVITKAEIAMKAATWQLERLKDDVAMLRKTLMELAYVAEENGIYLSNLTKASQDTIVAMRLGGFK*