Scaffold Ga0104986_1422

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1422
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14891
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (14.81%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000847	Metagenome / Metatranscriptome	861	N
F003459	Metagenome	485	N
F006105	Metagenome / Metatranscriptome	381	Y
F007748	Metagenome / Metatranscriptome	345	N
F009057	Metagenome / Metatranscriptome	323	Y
F011581	Metagenome / Metatranscriptome	289	N
F014844	Metagenome / Metatranscriptome	259	Y
F035287	Metagenome / Metatranscriptome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_142211	F011581	AGG	MTYHSTRPAKALTNALERLMIAISAQELEENHVLLCEYRRACDLLGYDPAKAQWNNVEAVNASGLPNDDPHTVDYYPLLNPEE*
Ga0104986_142214	F007748	N/A	VNLIETTIIGTVSAIVGGAVAWLTKGKFTADSLQVKQAQAVLAMWQATAEAQNKELTELRNELLVLRQRIESLESTIHALESENATLKAMQ*
Ga0104986_142216	F009057	N/A	MATFRKFAFPNQATADKLLQALQPLDTAVPLGELDGLVCFDILFQDAYPDSLAAYIVWPAPCGVHSFLGWDAQYEADYQEFATPQSK*
Ga0104986_142218	F014844	N/A	MLIGYGYGYPLSTLQGGGLSASAWAAFNARADADGATTAEAAVSDCLFGRFATIYNF*
Ga0104986_142220	F000847	AGG	MSWIKIKQALLNLANSHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSATTDLGSLALVVGVYFSDRVESIASMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATLSFQIPYALRL*
Ga0104986_142224	F006105	AGG	MIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNVSTDFTLLKSANLSNYTERYDKFSLAVGSLETGSYKYEVYDTNSTVAAAVAVVETGLAYVQVVSLTFNTYANTITYQPYAASAVRVFDSTFDPSFA*
Ga0104986_14224	F035287	N/A	MRPAPPKKRPGVQIVGRVAGVNAALLLLEKPYRATELAEVLGIHIRIMYRILNDLRATGHLYSHRCHYWFDPKKNNDLQHLIPVKDPYA*
Ga0104986_14225	F003459	N/A	MNQELVTIPKSDISKAEISAIATGLILRIEEGEVNPVAAHVRLKAIIKALEQVLRSTEQIVWDEAELNGRTFSAFGADIQLKEGAMTPDYSVDKEWANLNSMIKGREELLKAAFRNAGKMTVIDEATGEVVPVCPAKGTKPSIAVTFR*