Scaffold Ga0104986_1419

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1419
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14856
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009265	Metagenome / Metatranscriptome	320	Y
F009526	Metagenome / Metatranscriptome	316	N
F009679	Metagenome / Metatranscriptome	314	Y
F009746	Metagenome / Metatranscriptome	313	N
F036209	Metagenome / Metatranscriptome	170	Y
F048270	Metagenome	148	Y
F058100	Metagenome / Metatranscriptome	135	N
F090105	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_141914	F090105	N/A	MSFLTWFAHSPIASFIKVFGAGVLGWVLINADTLGFHPALTIGLVSALPIIINWLNPEYDNYGRANVDETD*
Ga0104986_141916	F048270	GGA	MDLLLLGQYSAAIITVATLIGLFVKWAIVKPIKLYIDTMTYPIQPHANGGKSLPDLINKVDALHVVVQNHINTNHDTPIYSKCLCESCVSC*
Ga0104986_141922	F058100	GAG	MMENKDEMFISILKKLYGAYEASHYFAESCEVCHETLVPFDTGVDPYTDTRTWMTKCCGVVNTYNQKLSPQI*
Ga0104986_14195	F009679	AGGA	MALITLSELKAVLGIGDIYADAIVQAVADSAENIILSYLIFDDVSIVGASLTNNTARFYCHNNTFVVGQALTVTGCGSPFNGSRTVTKVGYDEYNVTYFEAAITNADITKRSIIPNGRAVLTSQAALYDSVPEVRESALAVACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYLG*
Ga0104986_14196	F009746	GAGG	LANLATYRDALAATLAAAGRVVYSYPNENITPPAIVLVPGSPYITVSAIGGSRCHVRFDITVIVNAADNRAALANLETLIFSVTDLLANNISLLGGWSQPTVTQIGNADMLISQLNIEMVTTN*
Ga0104986_14197	F009526	AGG	MPATYITGRNLTLSINSVSYADQASTVTLEMENNQQVLEVLSGRAYKTVDKTATLNVEMYLDDTSSAGIISALWDAAKNAPDTPLAFSFDVNGDTFTGNLFPTFPTVGGAATDVLTTSISFVVEDGSVSRA*
Ga0104986_14198	F009265	AGG	MQYTVTTKQGNNYIVSDESAWLWIEIERELGYTVSQAAEKMSQGSLDVITCMLYKAAKAQGHTKLPSQQAWVTNEFETFEVVEESPKDNSLTDSSE*
Ga0104986_14199	F036209	N/A	MDMAERQTVKIQPDQSDLRNLYKAFRKMDDNSKLALKDEVTSISAWSAGELQNSYTMNPYPDQAQKVAATIRANKDRVPNVTIGGSKGRFSGGAVSGQVLFGSEFGGPAPFANGGRRFPERSAPQGRGNVGYGIFKVLKQIQPELTARWKQAIDRHVIKVWDQNG*