Scaffold Ga0104986_1411

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1411
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14781
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001326	Metagenome / Metatranscriptome	721	Y
F001872	Metagenome / Metatranscriptome	623	Y
F002421	Metagenome / Metatranscriptome	560	N
F002794	Metagenome / Metatranscriptome	529	Y
F003964	Metagenome	459	Y
F009743	Metagenome / Metatranscriptome	313	N
F033005	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_141114	F001872	N/A	MNEWIKQALAASNGALWNNGSWGVRDMRGNPGSLSVHATGRAVDLSYRKSERHPNAIRKGAVSFIDIVVANANTLGVECILDYFPAPYGRAWRCDRQAWKKYSKPTIHGAPGGDWFHIEITPQAADSVIFVKAAFLKVFGEIPPKA*
Ga0104986_141117	F002794	N/A	MERQMSEGTAYNQGELTEETRKLVLEQTAMTNHTMAMFGLIDDIMAVSKNPHASIIQRLKTMKNQLSLEDPMPLYDVTTLDLAIKALQAHS*
Ga0104986_141118	F002421	GGAG	MKTCSICKGTIAYPEIQGKTHFVCDGRVPAQKLTPFMQGMIASQSSADARWTREEQNKVDAAILHVARTKGFFTSDDIWKHLGDQFPVTKGIAGRLNAAARRGHIRNTGELAYAQRGGAHDHAQRLSVWAGI*
Ga0104986_141121	F033005	GGAG	MTRKLTEHDTAIYKQARAELLRDQPLCHWCKRNTATELDHLVESDKGGTIEDGYVAACKPCNSARGATYRNKKLANAKQNREKAINDFLYANEMPPTQLRIISDDLDQPELAVTGR
Ga0104986_14114	F001326	AGGCGG	MATYTVTNKYLIDNFAVLQLLTPSEIAVGSSITVAGVDATFNGTYTVRALPQYLFLGIDTQGDLLYDYQVPIADQVLYAKTASDVERVAASGTVSYAPVCTWVTAADVMTYLGITITNPSDDYTLLTQSVSAGNQFCYRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIEATYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA*
Ga0104986_14117	F009743	AGGAG	MKIKLQLKRTPDSAPEYYYTNLFVVTEWERLERRNIQQLSTSPLYSDYCCWMHTILKIKGEQVGDNWRDWISKNPDIDIMPVLDETDPNPTDAAPTAAN*
Ga0104986_14118	F003964	N/A	MRQTKIGDNVAEVSARVEVVGLKDALKTLNKIDKSLRREITKDYKKIVQPVIDDANKLVPSTVPLSGMARNWKTGSGFQMLPWIPGMKQKIAAKINTRAIKEYQGNTTNVGTFSIQWKGATGTMFDTSMAGALGRALTTRYGSRSRVMWKAYEQRQSDVMSEMEQLVKRVMDEANREIK*