Scaffold Ga0104986_1396

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1396
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14606
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (59.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001326	Metagenome / Metatranscriptome	721	Y
F036685	Metagenome / Metatranscriptome	169	N
F044371	Metagenome	154	N
F079819	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_139616	F079819	AGG	MDAKTYIYEVYTSNLETGQQVMVQIFRDPLDGRVLHSQLAFKDAAGSWGIPYQLEKK*
Ga0104986_139618	F044371	AGGA	MGNSEVNDIYPETGITEHTRAMMGMIDDLFTPNHIKRSKASHLYHLVGELEALRDDLRRMEDPRANFLQLAITELSQLII*
Ga0104986_13964	F001326	GGAG	MAVYSVTQKYLLDNYAVLQSLTPTEIAVGQSITVASVDATFNGTFTVRALPQYLYIGIDTEGDLLYDINVPIANQVLYAKTASNVERTVATGTITYTQTCTWVTAAQLITYLGVQITDPSDDYTLITQAVSAGNNFAYRRRQEAGYIDSLTTSPGGDATLGTLMYCAALWRSRGSLENTFASFDGMGAAPQQSLTPIVKQLLGIDRPACA*
Ga0104986_13968	F036685	GGA	LPDKGEKMKVKLSIDLGDGKPAREMVTNMLAIVDWERTENRRSADGKGIGFSDMCCWAYTLCKLAGDKVPANWREWVAENPDMTITPINEVADETPFIEGLGGEASAKS*