NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0104986_1395

Scaffold Ga0104986_1395


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1395 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)14599
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (27.59%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002909Metagenome521Y
F011078Metagenome / Metatranscriptome295N
F033349Metagenome / Metatranscriptome177N
F039104Metagenome / Metatranscriptome164Y
F075873Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0104986_13951F011078N/ALNKADIILELSKADWLTQATRNIAKDRELARELYQFYFLTLLEKPDEQIEKIYRDGYIQFWSIRLLYLAINGNRHPFGNSRIYDQYDVYELDFAEEPDLLLEREEEETIELERINKINQVTESAYFYEKELFKMWCSGMSARAIHRKTDISVREVLRVVKLMKERCTTK*
Ga0104986_139514F033349AGGAGGMIECTVNGWILTIGGDRYVYTDKQVDDYLLNNHFDELEPYMIKRDVYFGGCVETNLVGIESERFFYLEPDKFTVLFMLGQKTNFL*
Ga0104986_139516F002909N/AMAEIDISKLGDSLDTFLGQGGNDDLLHQIIENWWNQKVYPEIARSMDEKKINASSALKQSFVPGEIIKTPTSINTILMAEDYWEFVEYGRKPTRNGHTEGTPYLWQSIQEWIAYKGIKPTNPDMSYESLAKAIARKIHRRGTKANPFLADAFTESLQMELVNELNARLGDLIFAVEVKS*
Ga0104986_139517F075873N/AMRFLLILLFPLTSYGQVLVDTNTIKQANHYLVKGAIAREQVTVLRKIVTSDSIIIAEQDSIIVKVRIKNAYLREKNDALVSENKAISRTLSLFKSVSIGLTILMLVGWLK*
Ga0104986_13959F039104N/AMKAIVIRATINHICKWRVYFGGELLATFETEQDAHDYAKFINDQQ*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.