Scaffold Ga0104986_1391

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1391
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14575
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (19.23%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001055	Metagenome / Metatranscriptome	791	Y
F001298	Metagenome / Metatranscriptome	727	Y
F001725	Metagenome / Metatranscriptome	645	Y
F001923	Metagenome / Metatranscriptome	617	Y
F003583	Metagenome / Metatranscriptome	478	Y
F003714	Metagenome / Metatranscriptome	472	Y
F005588	Metagenome / Metatranscriptome	395	Y
F017613	Metagenome / Metatranscriptome	239	Y
F021107	Metagenome / Metatranscriptome	220	Y
F029754	Metagenome / Metatranscriptome	187	N
F042864	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_139111	F021107	N/A	MTYLLCIAVGFAGGFVAGLKNAKSAKVEKAKSILDVLKGR*
Ga0104986_139114	F029754	N/A	MSCNTVTFKRGTSFSASVVWNPEVGGLANLIGVTVTSTIIDSAQNEYDLVCTVAGNGLSLTAVYSGDTGAWAVGSAKWDLKFSNNGSIFFSDAMRLDVIGQVTV*
Ga0104986_13912	F005588	N/A	MNIIRPHTMPRGWWLCPWAYAVVLHRAANAVKAYADRLDDVIDLQRSIIDDQSDEIRFLRQRVEDLNDAVIRGKAIIPDAEPHE*
Ga0104986_139120	F001725	N/A	MAAINNGTTCLYGVAGTVTNLYVQSYSLSSSFNSEATVVDEAGLTKTHRLDDRKSEITIEGICKTSTMPTLGAALSFTLNAATAYPSGAASVSFAGTITKIDEKGSNKGFTAVTVTAIDYEGITPA*
Ga0104986_139121	F001055	N/A	MGTKSIRHIVESTLATYLVAQTDLTSIAFLTGDSAATQTLPKAIVLCEAARAPSDLPEGLGNYSCSVRITLFSNADDTTLADHRLRCAALAGNMRDLTSIKAAFAATGDATCYDVTIGSEDEGVDERSWATAFSFDVLVVLPPA*
Ga0104986_139123	F001298	N/A	MSLYSEFLADAKEMIADFGVAGSANSGAITFSCLISDPAVQTVLEAGGYCERTQYSVRVPAVTASWTKPDGSIGASAALLSGGAPIASLGQGKKIVAGGKTVRITTQTYKPGSAWITLVVIDDNQ*
Ga0104986_139124	F017613	N/A	MANSISAAPAVLSAGVLSTLKNKLPVLSGISTVFSARPGSTGMSIQVPLIGISTATTFGSGGYATQDDATITSSTVSLTQYKVTSRFTPSNLKDYGADFFVNNFVQTASIGLAQKVMDVINAQVTNANYSVSSTSGADLSYAELVAVQKTLDDAKAPSPRYAVLNSTYVSDLRKDTTIVGNNVLGARIVADGDLGVIAGARIYQFANLANNSENLAGWVAGPDAIAFASALPDSMDIPGFEVSNAVDQDTGLGVQVLVGMEQSGYLNVTATLMFGAAVGRATSLVRLKTA*
Ga0104986_13914	F003714	N/A	MPNPKHAHTETIVVAGRPLTLKRPMAVFAARRLEAIIPQIAALNAAGKSQADAAEALGVSLHSLRTWLDLTGTTWVNLKRRGPYNISR*
Ga0104986_13915	F042864	N/A	MSTPTKPKATLVSDKAMVELLKRKVIAFRESASLKDKDGYVRGIGSYALYGVDHTRGQLVVLASEPTAGDFNPYVTAKAKADACSRYDQVVEYRDVGSHSRPKVTILCWTLA*
Ga0104986_13917	F003583	N/A	MGKAKPKESAASNLLLAVTLLTAFAGVSALSSAYIAGYVLDQLQNTEALALIVTDGGLKSDSKDLEQNMSVATMALRAVRDLGWALAVGCLGVGVAVFLRSRRQNAS*
Ga0104986_13918	F001923	N/A	VNSPIDPESVPKELKDGIVASILGGLAMTARLLLSTEPVSLGWVVRRVCAAAITAALVGYGIQDHISSPGLRMAVVGAAGYAAPECLDYLMRYIKARGEKEVSAVAGKPAKPHGKSKAKGKRGK*