Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1379 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1379 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	14432
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (85.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

14432

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (85.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F002149	Metagenome / Metatranscriptome	589	Y
F003304	Metagenome	494	N
F007467	Metagenome / Metatranscriptome	350	Y
F021063	Metagenome / Metatranscriptome	220	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_137910	F007467	GGCGG	VNEKEAWAKFEAGLKDAESFDEAVAWVKKNKKIVEKLTMMAMIRRFNEDISHANKTWRN*
Ga0104986_137914	F002009	AGGA	MTAPTIQEMGNAAQEIVWRVMGKGSDKSAYGDWLVKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETSIDHLERALVRSLFVLAQIKKEVPRL*
Ga0104986_137916	F003304	GGA	MEGRKMKQALVTQSFGEEWKKIIDLTRPRMEAYCKRHSVDFILIDKPLTHPMQYSKSAIGNIMATKNYEQVTFVDADVLIANDCPNLGDDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKVVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRHKDAMIIHYAGQSNDLVKLANQIQADEAKLVELGR*
Ga0104986_137917	F021063	GGAG	VRSTQLCRGDYDDRLQQLAGEVALQAIRDLRMLRKRGMVKGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVQIDNRTLLRKLKENDYVLPT*
Ga0104986_13792	F002149	GAGG	MTAVEYIEQSSVPEAMWPNLADWFGWFEKQGMVGIVRDEDGIAGVALARCVKDGQKPDHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRAGKPKDYDYMTFMRKALL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1379

Overview

Ecosystem & Geography

Associated Families

Sequences