Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1378 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1378 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	14396
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (71.43%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

14396

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (71.43%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F003441	Metagenome / Metatranscriptome	486	Y
F004599	Metagenome / Metatranscriptome	431	N
F006788	Metagenome / Metatranscriptome	364	Y
F043389	Metagenome / Metatranscriptome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_137816	F043389	GAG	MIATTTMWLWLYAMLGLVIGWAAVVKIMAQSFDRGYWSGRSAGWRAANEHYEKIRKLKYQSVFDYDKQN*
Ga0104986_137818	F004599	GGAG	MAFNLTDYEDVATLNKWFIANYPNGRSDISVISADPDKGYILVQATLWRDSNDQSPAVSNIAFGSRDTYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVDDAPIKNIYGKSGNSQVIEMALRKSFADDVKPTSEPTTWSIGDVAEALQTKPKQQECIHGLMILKEGTAKTGKPYYGYVCSAPKGEQCNAKWAVTAANGSWFFREED*
Ga0104986_137820	F000141	AGG	MTLFKCNGCSRKTEFLWLEQLDTPEGFKAYQCMDCGCVGIKNIAEALSVPDATISRCNQCGSWQFKNLPCHTCALVMSK*
Ga0104986_13786	F003441	AGCAG	MTAWSPDWKLTVAGVDYTDIAISDIAHQAGRDDIYQQPNPSYLSITFVALSGQTLPFNINDSLSLQVKDSSAAYVNLFGGDITDITVAVGATGSNATVVEYTILAMGSLVKLAKELYAGTISQDEDGNQIYDLLSSVLLGTWNDVPAATTWAGYDATETWANALNLGLGEIDTPGLYTMENRAASVDTIYNIASIIANSAFGYLYETNNGDIGYADADHRQNYLLTNGYVDLDARHALGQGLSTVTRSGDIRNDVYINYGNNFGSQKTATSATSIATYGYKAESIQSVFTQL*
Ga0104986_13787	F006788	N/A	MGQPLNIQNLPTQISSGEFAGYVEGWSWSTRFNELFITLNLSPVAFSQVAMRWNTTPIVETWQTIDPTLTWEYATIVA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1378

Overview

Ecosystem & Geography

Associated Families

Sequences