Scaffold Ga0104986_1366

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1366
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14305
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F001731	Metagenome	644	Y
F002433	Metagenome / Metatranscriptome	559	Y
F005452	Metagenome / Metatranscriptome	400	N
F005503	Metagenome / Metatranscriptome	398	Y
F010982	Metagenome	296	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_136614	F001731	AGG	MTVFNPVWRVTIGGNEYQTAILANLTITSGRTNIYEQAQAGYTNIELINLDQSNVAIAINDSLTIELQDSTATFIPIFGGSIVDIAISVAELGNVAYAQRVKIIALGALARLPKALTDGVLTQDFDGDQILTVLQDLLLNNWSEVPAALQWNTYDPTETWANAQNIGLGEIDTPGSYELAQRASSRTDIYSLVSALATSGLGYIYEDAQGLISYASADHRSIYLATNGYVNLSANDAQGSGLTIQQRAGDVRNTITLKYGTNSTSEVSATDATSVGLYGQLAQIFTTTVKHLIDAQDQADFYLTLRAFPQYNFNQITYQLTNPEIDDGDRDSLINVFMGMPLAIADLPLNMSAGTYLGFVEGWTFQAAYNQISVSLNLSPLSYSLQAMQWQDVSVVEAWNTISGILDWEHALVVA*
Ga0104986_136619	F005452	N/A	MTIEADIRTPLQTTLSTIAANVYNGIPEAMTSPSIVLVPDSPYLESTLINGSTTKVKINFLVTGVVGYSSNAAALTNLEDLMISIISTMPAGYVVGDVSSPTPLEVGTGKFLTADLQVSTYYTD*
Ga0104986_13664	F010982	GGA	MIMVRLSREDEIVAHTAGLARESRYGSNPKGIKERGNFHNAVVIHSEAVGAEMAVAKYFGVEDFQPTVNTFKNEPDVYWNGIAIEVKQTPHKRGHLIISEDDRDTDIAVLVVGESPSYYVMGWIPVGVAKRPRFQSAQGGYWVSQINLQPIETLRKSIHANT*
Ga0104986_13665	F000403	AGCAG	MEAAIMSDFVEVINPRTMTCKLMENGVVVQEYKIEQCDKCSRLVKFDDFGYQKGFGGEKIIWFCWDCR*
Ga0104986_13667	F005503	GGAG	MTTSEIGLFVIMAIACILWAICSYAVGYKEGHKDGYQRGKAVGRHASSKAVR*
Ga0104986_13668	F002433	N/A	MSVGEWTAVGGLVLAVLTAIYSSMRFMVKSIMRELQPNGGNSLKDQVSRIEQRLDTLILELAIKK*