Scaffold Ga0104986_1364

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1364
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14292
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003332	Metagenome	493	Y
F013413	Metagenome	271	N
F014620	Metagenome	261	N
F032279	Metagenome	180	Y
F055728	Metagenome	138	Y
F093869	Metagenome	106	N
F095479	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_136410	F003332	AGG	MAGTSVVQSGDYELEIDTGFLQDAFTLDSATMGILDGTQFVLNGTTNYASVLDGCGNVTIKRGRQDIGDQFSAGTMQFTMLDTTGIFNPFNEQSPYWDATTEQPGLAPMRKVRFARYDTLNAKQYLFKGYIVNYDYNFALGGIDTVTVYCSDDFYLLSQTYMDEFNVSEQITSARITAVLDLPEVAFPIAQRAISTGTQTLGGAAAFTVDNGTSVQAYLAAINQAEQGRLFMSRDGDLTFQPRIGNTLSGSVADFHDDGTNIPYQGVGISFQADQVINRASVTIKGSNNPQVADDPASQAVYFIQTQSITDSLLHNDAAGLSLANYLLEPNPIARYTSVETAFTALSTAQRDQVAIIDIGQTITVEHTFTTGATTSELAQELAIEGVQHDISLTQGHSIALFTSPTTIVYELILDDAVYGIIAPSDNVLG*
Ga0104986_136413	F093869	GAGG	MSRLTGAKLENEALHARLVFIVGVIMAVTFAIMVVGLLFGMLFVNMPAELSPMDGNIVDLLSTISVFLTGALSGLVASNGIKKNPKVDSETVHD*
Ga0104986_136415	F032279	GAG	MPLIIKLIIAFALSAITVGVSQIPQPTPDMSDTPTDAPYALIGGLGQYQADLWRYVPPVTTTVPAQPVYKHGDCSWLPALALQAGWSSEQIPQLTKYALRESGCCPNRAGGDMVDKNCNITGVSEWSHRSDSGLLQINGVHWLPTHKNYDGLICKQMRICTQTPLLDALTNLRAARLIYSKVGWSAWGN*
Ga0104986_136416	F013413	AGG	MTENEYDEVFAMQMEKQHEQTMARMREFKMIGEQISKMPVVSERTLEIEVRYLMGIISELEQRCKDLESEVRRLDQLVHRATN*
Ga0104986_136417	F014620	N/A	MFTQTIGLAGISYRPAVDRNVVIVAVDAQQTSRDAAHKVKPKTGKKRQRVHAYLLGRPATDEEIETALNMSGNTVRPTRGTLVKDGLVVDSGLRRLTRAGNEAIVWRCV*
Ga0104986_136418	F055728	GGCGG	MRRSYDPNYGSREQLRHSHEHGMKVARERDALKTENAALLDEIKELKALIAYITEGE*
Ga0104986_13644	F095479	AGGCGG	MTIYNVSSKQLLNNFAVLQTLEQGSFEVGKNITVASIGSPFNGSFMILDLPQFLYIGLDAWGFPAFNYNIPLANQILFACTGSDVQRTPSTGGTITSVSVCTWIDDQDIMDWLGILVASPEDAAFLVICAEAANAFCSLRRSENGYFDQLGTVPSSAVKLGTTMYGGALYRQRGSAGQDFATFDGMGVGSTNGLSPIVKQLLGINRAVVA*