Scaffold Ga0104986_1360

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1360
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14224
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F001731	Metagenome	644	Y
F005452	Metagenome / Metatranscriptome	400	N
F005503	Metagenome / Metatranscriptome	398	Y
F010982	Metagenome	296	N
F029109	Metagenome	189	Y
F047681	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_136010	F001731	AGG	MTIFNPVWRVTIGGVQYQTAILSNLTITSGRTNIYEQAQAGYTNIELINLDQSSVVIGINDSLTIELQDSTATFIPIFGGSVVDVAISVAELGSVAYAQRVKIIALGALARLPKALTDGTLVQDFDGNQILHILQDLLLNNWSEVPAALQWNTYNPTETWANAQNIGLGEIDTPGNYELAQRASSRTDIYSLVSALASSGLGYIYEDAQGLISYADSTHRSIYLATNGYVNLSANDAQGSGLTIQQRAGDVRNTITLKYGTNSTNEVSATDATSVGLYGQLAQIFTTTVKHTVDAQDQADFYLTLRAYPQYNFNQITYQLTNPEIDDGDRDSLINVFMGMPLAIADLPLNMSAGTYLGFVEGWTFQAAYNQISVALNLSPVSYSLQAMQWQDVSVAEAWNTISGILDWEHALVVA*
Ga0104986_136016	F005503	GGAG	MTTSEVGLFVIMAIACILWAICSYAVGYKEGHREGYQRGKAVGRHISAKAVR*
Ga0104986_136018	F000403	GGTGG	MSGPIEVINPRTMSCTLMEDGVVIATYKVEQCDKCSKLVKFDEFGYQKGYGNEKIIWFCWECR*
Ga0104986_136019	F010982	N/A	MQMIMVRLSREDEVIAHTAGLARESRYGSNPKFVGNKGNFHNAVVIHSEAVGAEMAVAKYFGVEDFEPTVNTFKNEPDVYWNGIAIEVKQTPHKRGHLIISDDDRDTDIAVLVVGESPTYYVMGWIPVGVAKRPRFQSAQGGYWVSQINLQPIETLRKSIHANT*
Ga0104986_13604	F047681	AGAAGG	MPQIVTASELRSILGVSVSLYSNEYLEQMIESAELTILPLLTGYQSAVTEVFVENSIAYYGTQRVNYFVPGQDVVITGCGIYDATVTVTDDRIAPMVFTSATGEADSTYTIPIIPSGLACIDGATAGDLYSGVAPIKSAILVVAVEVFQSVTAPGNQIMSDAFQPSPFVLGRSLTSRIVGLLGPFLEVETMCL*
Ga0104986_13605	F005452	N/A	MTIEADIRTPLQTTLSTIAANVYNGIPEAMTSPSIVLVPDSPYLESTLINGSTTKVKINFLVTGVVGYSSNAAALTNLEDLMIEIISTMPAGYVVGDVSSPNPLEVGTGKFLTADLQVSTYYTD*
Ga0104986_13608	F029109	GGAG	MAFKATKGQGSFRIEVEPYALKNLISTLNTLDKETQGRVRDAAQPLSKRLAGQLMMFGNSSPTPQTKLVLQSMLTPRDRLIRVDLGGPKKVGRPYGGTASKSGKGNKVGRSAAPAGALLWGSEYGSHSGVDRAGRRYSNRFKAPQNRSGYWINDAVDYYTPVVAKEYIAVVQGIINDLRLN*