Scaffold Ga0104986_1357

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1357
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14137
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028788	Metagenome / Metatranscriptome	190	Y
F064657	Metagenome / Metatranscriptome	128	Y
F093505	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_13571	F093505	AGGAG	MKDGMRKVAKEEVRKHEKSMHKMRAGGKTNSDMKKYGRGMAKVMNQRSPMRGSSGPR*
Ga0104986_135712	F028788	AGGAG	MAMQTDVLASKVRTDAGQMLDQNSLVIGRARVKAIYIVPDTTAGTVTFIDGGASGATKIVVNTKGSSTTPDYILLPGEGLLFQSNIYIVPSAVVSTMVIYG*
Ga0104986_135722	F064657	N/A	MDTPQLVPDIEDSVPLPAHAREAFPELSAHEEIQMRARTIKLISDITQTAIEPTDIDAVQAEELAREMVVNPEKKPDFSIYPNEVIALYAGIAARYNHMIVKDLADLKLYVVNKLFESVEAASDVKTRVSALKALGEVEGIDAFKRRSEITHIVKPIEEVEKELLTVLEGIEYKVLDEESGQTH*