Scaffold Ga0104986_1356

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1356
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14136
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F008130	Metagenome	338	N
F010237	Metagenome	306	N
F013988	Metagenome	266	Y
F023058	Metagenome	211	N
F027510	Metagenome	194	N
F033421	Metagenome	177	N
F057151	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_135610	F057151	GAGG	MDIPQYFAQIDENNIVTNIAVVTHAFMQENPDRYPGTWVETFINLPNKTYAGMGYTYDETTKDFTPPPTIEPA*
Ga0104986_135612	F023058	N/A	MAGVAVVASGNYDLEIDTGYMWDAFTLDDDLKGELNNTEYVLNGISQYASVMDGTIALTAKRGRQNTGDQFAYGTMSFTLNDTYADGVFNPFDTTSPYYDPANDQPGLAPLRQVRFSRYDSLNVKKYLWVGYIVNFDYTFTLGGLDTVSVNCADFSYQLGQTFLAEWNVTEELSSVRFNSMLDLPEVAYTGTRDIATGVATLGGAAAWTVANGTSVAAYANKINEAEQGRIFVDREGTIVFDSRIGTTLGNPVAEFHDDGTNIGYSAIDISFQADTVVNRASIQHAGASSPQVAEDLASQALYLIQTKSITDSLLHNDAAALTLAEYLINANPEPRFNFLGTEFPGTPTADQDTLALLDVGDLINIQKSITTSAGPTQFAQNLTIEGLEHRLTLSAGHAVTYFTAPTTIVYELILNDAVYGTLDAENVLG*
Ga0104986_135614	F033421	AGAAGG	MADGIEARIEVYGLKEALKELNKIDKSLRREITKDYKRITAGLVSDIESAIPLNYPLSGWQRRWTLRGSYEVFPWPTEHKVKAYINTKPPKEFRSNTVNLTTFAIKWIGAAASFFDFSTSNAMGQHLTAKYGDASRVVWRQYEAHKEDLNSAMEQLVDRVGAATSRDLKAE*
Ga0104986_135617	F010237	AGG	MAVPNYTDLFNEGFDDLVTKLSTVSGLQVNNDPRNITPPSVFVNIDSIDGYNYNVAKLNFTLQIITLGPGNLDAQKSLLNILAQIYALNIGVVSGRPTNLDIGGSTLPAYELSVSTVVQTA*
Ga0104986_135618	F013988	AGGAGG	MAAYTVTHKQLTDNYAVLQLLTEAEIEVGASVVITNVDATFNGTYIVYALPQYAFMGVDNEGDLLFDPLVTIPNQVLYAKTASDVARTAASGTLTITQTCTWVTAAMLEDWLGIGTATAADAAFLTICASACSQFAWRRRMEAGYIDSLTTVPSQDVLLGTQMYGGSLYRQRGSVDQFASFQNMGVTPVMGLNGMIRQLLGIDRPQVA*
Ga0104986_13565	F000722	N/A	MTDAQYPETGITEETRQMYPNTYSDKYNKVFKQFVDDIFRPNHLPKPEQPDHTILLDELTLMYDAHMTIGGEQNRFNASVIKAAINVIRAL*
Ga0104986_13567	F008130	N/A	MPYGGNTDDKGDAMADAKTYIYEVYTTHLDSQQMVLVQIFRDPETDQVLHAQIAFKDAIGDSWQTPYQLEKK*
Ga0104986_13569	F027510	N/A	MTVNNLPKFVILLMGLLCLTALMIADKIDMQSGVPMLTMIIGYSIGNGVNAKQGAESSNVFGKRNK*