Scaffold Ga0104986_1334

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1334
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13863
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036551	Metagenome	169	Y
F040536	Metagenome	161	N
F055552	Metagenome	138	Y
F068601	Metagenome	124	Y
F090097	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_13342	F068601	GAGG	VRSERTSVSSESIVQLSAIRRQRHIASSPYGPVKAGLTTWPDQEINKEDQEARLTELLNSLESVVESLQYKSFTVYDTLTIAIEGVRVALLGSTNDTGGTKC*
Ga0104986_13343	F090097	GAG	MAVRQRNYRRVRDRALTRLAQAYPETYKELLELEKVNDSTSGAKWIDIDGNTSLVVVTSTGGRQEGTIIESASYFAEGEGERE*
Ga0104986_13344	F040536	AGGAG	MMSKLGKLIQFHPVKSTLSLFYEVIEPDGETRWGGERAFDAISWLHLAPKGSRLLVSGWESDDLDALPVGQPLDVTEMYQLLKGNS*
Ga0104986_13347	F055552	AGGAGG	MNKEYWQAKANLCRKIGIEQLIAGDIKNGNRNLKRMVRAMEELNLINALEEEKPAADMWADLIANGLLLAGEGEGK*
Ga0104986_13348	F036551	GAGG	MREQLNALLTDEVRECELCGSRSWRILHEGDESNCECEGECLRVCDNPELSDEGCDGVAELVKGGK*