NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0104986_1330

Scaffold Ga0104986_1330


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1330 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)13777
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (69.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021520Metagenome / Metatranscriptome218N
F026250Metagenome / Metatranscriptome198Y
F036672Metagenome / Metatranscriptome169N
F039035Metagenome164Y
F067688Metagenome125N

Sequences

Protein IDFamilyRBSSequence
Ga0104986_133010F039035GAGMAFDFVLTIDQAELAAILADFYAASNDQRPNEFTPTNPSVVNSVNVAIAPPIPTSSNLQPTIEFANATAAASVADFGKQETPLVVTLLETLDDAGDLAGYLIQPVPRFWFGNIQVVMNGLTDAQRTTITNLDIGSQISVTKTFPKSTPSTVTQLMALEGITHDITPDRHIVTLYTNPARIYTYFVLDTDTLNNESRGLG*
Ga0104986_133015F036672AGGAMKFWGEFHALIWTIAASVTTILTLSGTLQRIVIWLTVAALVLHFIGAYTNKDNK*
Ga0104986_133018F067688AGAAGGVDWGVVVAALVTAVGGIITTLLLKVRKENTEDHANVMEILRSVGGKVERIDSKLDSHIDWHLKEATSGEVSKRN*
Ga0104986_133021F021520GAGGMSHDEMRTMVVVIWHDAHSATDAWTPIDEIGQDPCVVVSAGFLLPTSDGGKEGHVTIFQSKTESDDVDGVLCIPAEMVQSMKVMTKNIPGLAPETLANKGSKKS*
Ga0104986_133025F026250N/AMSDPKEGIMTNRQKQIGTVIGMAILWGFWLLPTAEDLPDAQPATSLEWKLFIALNFAAIVYLHILNVREHQLQIRKEAQERYWERMETRSRNNHPTNRDYQ*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.