Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1317 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1317 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	13638
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (64.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

13638

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (64.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F001834	Metagenome / Metatranscriptome	628	Y
F002044	Metagenome / Metatranscriptome	599	Y
F002162	Metagenome / Metatranscriptome	588	Y
F007469	Metagenome / Metatranscriptome	350	Y
F028508	Metagenome / Metatranscriptome	191	Y
F105165	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_131710	F002044	AGTAG	MANTRKTNKPKKINRRVVRQSPEPLSKIDQHYIALHSCYKAARKAGFTPEHAFWLMTEHKTFPDWIVGDGGIIPSIDPTDDEDDD*
Ga0104986_131714	F028508	GGAG	MAKLTRPIVRIHNTETNEVIDREMNDAEFAQYQADQAAQAIAKAETDAKKIAKTAILDRIGLTADELKTILG*
Ga0104986_131716	F000468	GAGG	MTVFNPEWKLTVAGTTYTSIAISDIRHKSGRDDIYTQPAPSYMQISLISTDGTTLPFTINDSLALQIKNSSGTYVNLFGGNITDVTVEVEKSGSVGTVIAYTLLAMGSLVKLAKTITDGILSQDEDGNQIYTLLSSLLLGTWNDVPAASTWSGYSATETWANAVNLGLGEIDTPGLYTMENRASNPDTVYNIASDISNSAFGYLYEDNQGNIGYADADHRQTYLAANGYVNLSANHALGQGLRTTSRSGDVRNDIYINYGNNYGSQKTSTSAASIALYGYRGESINSKLHSAVDAQAVADRYISLRAYPQPVFDSITFPMTSSELSDANRDALLGIFMGQPLNIQDLPTQISNGEFEGYVEGWSWSTRYKELFLTINLSPVSFSQVAMRWNTVPVGEAWNTLSAILTWENATIVA*
Ga0104986_131721	F001834	GAG	MPSSTILSAVRQPLATALASVAGNVYSYVPESVIPPAVVCVPDSPYLEFDLINKSVIKCKINMTISVAVAYNSNPASLDNIEQLLMSVLAVIPSGYEVSSVERPTVSQVGASTLLIADIRVSTYYNQT*
Ga0104986_13174	F002162	GGA	MPNYEYECDREGSSIVLDLPMEHEIPLCQVCGFELSRVYTPVPAIFKGTGWAGKK*
Ga0104986_13175	F007469	AGGAGG	MGELQIIDGSGLTATFTDNGVIVEPSTQVCDVCNDDRLLHEGDLLRCYVCHAINRIP*
Ga0104986_13178	F105165	N/A	MVCGYVGSDMTAKDDMLQLAWIFLGLGAFTWIIYEIKETAFQNGYWKGREAGWQSHRRLNNIKVQSDEVFDYDKN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1317

Overview

Ecosystem & Geography

Associated Families

Sequences