Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1298 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1298 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	13305
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (50.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13305

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (50.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002455	Metagenome / Metatranscriptome	557	Y
F004723	Metagenome / Metatranscriptome	426	Y
F027823	Metagenome / Metatranscriptome	193	Y
F030085	Metagenome	186	N
F038644	Metagenome / Metatranscriptome	165	Y
F100474	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_129811	F004723	N/A	MTEGDKFIYIDRYGKEWELTYTGNRIEIKGCQFELFVDDKGKGCFFTDSEVDKMEKKD*
Ga0104986_129826	F002455	N/A	MNEEQFDIKDDRRTYYYNIRGKMEPDYESMAAYLLDEGILFVGLAIDKCDNQECVGLFININDYFVPMADSEAVTYDELPKLYELYKERKHDGVAQFVADKRGIPNIYWKDEGSSFRTRMKETK*
Ga0104986_129827	F027823	AGGA	MNVTAAINVPNVDQTSIWKGYYEAHFMSGKEIDIKYPILNTKWNYSHAKYSNNSINYDGYYYAYEKEIGTGVMIDPWFREFKSHIAIIDSHYGFKRFMGYHTTVEGNSVLLKIYKIN*
Ga0104986_129828	F038644	N/A	MSSIKITQLPNGPWREYALEAERRGLEKISDCRLSGTDVILIGAIDMIRDLNERLTKLETKKDKDVV*
Ga0104986_12985	F030085	GAG	MIKLSHLILEQLLSEISANTPLYHRSMRKMNVGDAIEIPKNDTGKHALSSKMGEIALEQERKEIAPDAPSRLNCVYSSLIPRSRFVDKGYLYRVKPTGRIFTADSSLIDTIMERFDREYYEYISRYDQPERKEIEQELLQNPSRLTGYLPSEAYYYWKGSLPNLSDKSALRDIEVLSDGAIVTEVITESEKATPFVTGDDVVVTESGKLKASLDLYINSKLVSKGEDVKPDLTEQEINDFLNYIGNEIFDGVKSKEHYGSIRFDGYLKKGAKLKIISLASVIRGGRDNTKKGKYETIMFDFYYNGKLISRNRKVNDKNITHRFVIGSWDNKIYDYSKYQKSLDFILFQRYYKRII*
Ga0104986_12988	F100474	N/A	MTDKQYIKKLEDALYDSLALNINWVSTALYSDLEFHSEYEEVIKQAKETLKLSKNKKMHNVRED*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1298

Overview

Ecosystem & Geography

Associated Families

Sequences