NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1286

Scaffold Ga0104986_1286


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1286 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)13136
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (52.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004670Metagenome428Y
F005027Metagenome / Metatranscriptome414Y
F005451Metagenome400Y
F071244Metagenome122Y
F084244Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0104986_128614F005451AGAAGMANRPYPYYPSWDGKQTQPVTNKLVELCKARWGLVSLGTYANRPMRNNAGLSVHATGYAADLKYKDEAQARTIWDWFLANSAALGLCEMHWYAYGDYGAGYRCSRGENKAGVKIFTADDNAGSYEGNPNWFHIELAKQTPEHFEEVFRALK*
Ga0104986_128615F004670N/AMKDYLLEDLPLFRSTDPETSRQVNPIKVGTHRALLLEQYATASLGLTDEEAGMRATLAGHDIKGYWKRCSDLRTLGLIQPLSIRRTLSSGSQGIVCVITEQGLNMVRGWA*
Ga0104986_128616F005027N/AMWQDGNATANKGKTMETSTGELIAKLTNISMNLALELRFKEASVIMEAVGALHQLPNIAETIRDSWHPSLATTGPSKGISYLSTVKLGDPDDK*
Ga0104986_12866F071244AGGMAYTIISEAVGTPGDEYVPAEGINIEALLDGGFIKSDKTPTKSAKTVETSSEE*
Ga0104986_12869F084244N/AMTVDVGMEFSGLKDALAELNKIDKSLRRQITKDFKAIVQPIVAVAESSLPSGAPLSGMARSWKSKSGSDIMSWQDARVKKNIKAFTSSKKVRETVSGVKQNLGVFGVKWAGPQATIFDMARNGVLGDNLTAKYGAPSRVIYKAYESASADVERQVADLVNTVMELTGNHGRI*
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