Scaffold Ga0104986_1274

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1274
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12968
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (55.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010601	Metagenome	301	Y
F021491	Metagenome / Metatranscriptome	218	Y
F023804	Metagenome	208	Y
F052462	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_127410	F021491	GGA	MSVQKKIDEMVLGYLKAAEGKARIMSPQDIAKLVSEAAHKGAMMGYDAGMQMARRSHGKELEIAELSVKELTERVKQLETELIAQQ*
Ga0104986_127412	F052462	AGGAG	MTRHIGISVPHRKVQDDDDIQTYKKPWVSLTEKQIHECIHYGKGGCEIEQTARNIELKLKGLNYD*
Ga0104986_127419	F010601	N/A	LSQELRTGKVPVCIRKDYIFYLEFFDGLLWFHTDVRKWTVEVKKRFDEDFGLLRNLVGKPIYALIREDDIKLARFAKNIGLSEKCQISLLDGSRAFIYASA*
Ga0104986_12748	F023804	N/A	VKIIKGANSMTETLYKFNCEVEGVELTCHLEYEPEELNHGEAPDFPACMNLVNAFCGDIDIAHILMQSIVDHICEEALNQLNSESDE*