Scaffold Ga0104986_1260

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1260
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12823
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (19.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031094	Metagenome	183	Y
F038238	Metagenome / Metatranscriptome	166	N
F093854	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_126011	F038238	AGGA	MKLDYQGRQLKLHQRATCLLELLKKAQSEQSRQEGLLAEWRAAGSYDNVRLFTHENNYLIRLAELNDIQKRILKSYYWLVVELYDITENFILPVNRIQ*
Ga0104986_126013	F031094	N/A	VRLTNAQILNLKPKTMKPVLIYDNNFYPYNGQFIAQGGDNIYLDYEIDGTRFFLVKFRTIDLANNQIILSIVKL*
Ga0104986_12609	F093854	AGAAG	MSYIDNTKSNMMREIYILELENEMLRKQITKLKIELNELLDSTKRTEAKIEQERKGTIG*