Scaffold Ga0104986_1241

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1241
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12513
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004668	Metagenome / Metatranscriptome	428	Y
F038213	Metagenome	166	Y
F046346	Metagenome	151	N
F077011	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_124111	F038213	GGAG	MTRSQVDAIIDRLDAQSAKIDRLQSEIDQMKGGLTVLKGLGALLGVGGIGTLLAWFQSQSGK*
Ga0104986_124113	F004668	AGGA	MEGLMARTEDHIEDIHEQGWTRVDTAPEEWVALVPNEDHSAFGGTLWKRGENGVDYSEGCTAAHPISAALSFEAAARAVAVLIKKENAG*
Ga0104986_124114	F046346	N/A	MKYRIKSQLYSDAEAQKKVGAILDDCGPSSAAAAAAYVHGYAPDFSAADGVAAKQFATGFKEKQGVSDNGSSLADLAKTVRYMGCKARMPDDWQDVLASVKGGAAGLLWVQGPIGYPKQALSKWHRNWVKYWEKKDPAVIAAGYGHMTSFAYDTEAQTFVFADPTFDERDPKEQYAVTVTEAELKAIASGKPGSPASHVVIVTKKENQ*
Ga0104986_12414	F077011	GAG	MKDLTILDAMAERLKSVEPPVGYSLRNVYATPPESLPVVPAIVFFPGDDTVAIGSANRSVTLTVNAVLYLTPIPRMDQKYRDLYTWRSWMRDAFNADVTIDGNAAQVTVTSTTLGTDTYADQDYLTVTAAVEVLVYEAIAYSE*