Scaffold Ga0104986_1239

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1239
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12455
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (41.18%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020891	Metagenome	221	N
F022193	Metagenome	215	N
F023838	Metagenome	208	N
F028156	Metagenome	192	N
F034162	Metagenome	175	Y
F042314	Metagenome	158	N
F042315	Metagenome	158	N
F066745	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_123911	F020891	N/A	MTFAEHAFAACARKAKEVGRRLNKDEWLATMQAAYDSYPHGGLLVSDSPKPKKVLPKASDEDWLKELEANPAYAGIDIRRELGKAQAWASVRGVGVSQRRFINWLNKAMTDRPIGLAASDPRTLNRTQSKQQDEPAGWREWVRENAQNPDNANKPWSALDPAAQKYIIQQLSNV*
Ga0104986_123912	F023838	N/A	VTSHGATIDLDRLIRCLEAREGARWASPGGALQFTKATWSEFSTDPYLRASQPDKARQIARKALFLTLQRMERDGIRPSVWLLALRWNCGYEGMRRRMGEPWSYAAHVHNLYYDNDFR*
Ga0104986_123913	F042314	GAG	MTHTQSGQQLKDTGCALVLEHTPERWVADFEQQAAALLKTNGSFTAEEVVTLIGQPPNHSNAIGAACRQFVKRNGLTGSYEPARSPSAHGRIITRWSMTTF*
Ga0104986_12392	F066745	N/A	MPFKSKAQSKACFASGGFDGSVDCMKWAKSTQYKKLPARVKKSKKK*
Ga0104986_123924	F028156	AGGAG	MTMVANKEFRHVSGDELLARAKLCAKLLEVIEEVTQASELIKDGRYWDAYRVTNKIELMASEVSLDLHGIDIALGEEGQP*
Ga0104986_123926	F022193	N/A	MTDTHDSHVKDYYEYHAEQSAFFDHLAEVNKPVDAGIDEYVALQQMEHLYQETGTWNADVWAEKGWW*
Ga0104986_123929	F034162	N/A	MRWVDATFRLPVAANMPVHVMLADGKEERRDTVTGDWRAVVRWRTVVDTEPAKRKKKA*
Ga0104986_123933	F042315	N/A	MKKQKRYPRNWNLEHKPSNKWQQVLVARKDKNDRDVRRNAKSLPDLSPTELYEVIDEGYHYFWQRRGRIPPNYNAIRWAKA*