Scaffold Ga0104986_1221

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1221
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12234
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F002302	Metagenome	573	Y
F008130	Metagenome	338	N
F014013	Metagenome	266	Y
F014971	Metagenome	258	Y
F027510	Metagenome	194	N
F044491	Metagenome	154	N
F053133	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_122113	F014971	AGG	MTYEEAVAMYPHDSVFIQMDDVVRPMTPAEYEDFIQRQVDYIPES*
Ga0104986_122114	F027510	N/A	MTVNNLPKFIILLVGLLCLTALMIADKIDMASGVPMLTMIIGYSIGNGVNAKQGGESSNVFGKRNK*
Ga0104986_122115	F014013	N/A	VIPANPKVIGSKPYTGNSDGASAGPLPGMDEWIRRAIRYGAGAFWNNGSWGVRDMRGNPGSLSVHATGRAVDLSYRPSEQHPTQTVKALLRLLTLCLLMPTN*
Ga0104986_122116	F008130	N/A	MVETPTIREMQMADAKTYIYEVYTTHLDSQQMVLVQIFRDPETDQVLHAQIAFKDAIGDSWQTPYQLEKK*
Ga0104986_122118	F000722	N/A	MTDAQYPETGITEETRRMYPDNYSDKLGKVYSEMINDMFRPHHVARPEPPDHSILLDELELLHEAHITIGGQQNRFNAAVIRSAINVIRAL*
Ga0104986_122121	F053133	N/A	MINPDESYNRLHDHMMAIARERDWLQKEVDRLTDELHLAHEALKREFVDKGIMKAVTK*
Ga0104986_12214	F044491	AGGCGG	MSTYTTASKQLISNYACISTLEPTDIALGENITVTGLASPFNGTFKVLDLPQYEFTGVDSTTGEFQFDVNVPRANQIIYAATGSDVEYVITYAGTVAYTQLCTWITIADLVTYLGVTISNPSDDYTLATQATNAANVFCYRRRQESGYHDSLTTSPGTDATLGTLMYGAALWRSRGSIETAYAAFDTMGTPTQQSLTPIVKQLLGIPRPAVA*
Ga0104986_12215	F002302	N/A	MAYTDLFNEAIDDISATLTAVSGLRVVTDPTKLVPNCVFLQAPSFTTFGGNGNIVTMQFPIKIVGSGPAGLPVLRDILAITATVLAAGVAILSGQPH*