Scaffold Ga0104986_1216

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1216
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12164
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (92.59%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002707	Metagenome	535	Y
F009140	Metagenome / Metatranscriptome	322	Y
F012211	Metagenome / Metatranscriptome	282	N
F032955	Metagenome	178	Y
F044970	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_121611	F032955	GAG	MNKDEAHHLLNKRKQGLAVPLYIVNRALVISGDIGMACSPCQAARVESTSMAQGQGTGGLPNIPMAWDNHRFNQHHEGPQ*
Ga0104986_121616	F002707	AGGTGG	MTQSQALTHALVLAIIAPDDDKAAQASTLASQIAQGLTKTQVNRCKAQALKILGENP*
Ga0104986_12164	F044970	AGG	MSDFNDYATMLMAIEQKTKALESKCLNKNYAGFTGDITAIQHELTMLTMWITQAQGEQIRENTYRILNKV*
Ga0104986_12166	F012211	AGGAG	MPTDEEQFKYECWAIVQELDPEDIADAIQDSVALVEAIKANHAEDVASIVMNRVELKVRRRAELRVFDVVKTQWIDDIEELQHYRNIRIERVQKALEERKITAAKMDGPFKEMFDE*
Ga0104986_12167	F009140	GGAG	MRLNLTHRALLKRLSGGPRTMLEMTHSYTDNNSVSFHYQRYLPDLEQFGYVINHQEKWHLTEYGRMEMNRAISGAAMRIENGSVKEIYDGKELRRNVFRRGCYDFLKYPSRFGDTQIFKA