Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1198 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1198 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	11994
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (55.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11994

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (55.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F008130	Metagenome	338	N
F014971	Metagenome	258	Y
F026267	Metagenome	198	N
F044491	Metagenome	154	N
F067738	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_119812	F014971	AGG	MTYAEAIAMYPHDEVFIQVDGVVRPMTPAEYEAFIQRQVNAVPIT*
Ga0104986_119813	F067738	N/A	MEVLTAAIIAGGFTVIVALINRADKTSRSEHADTHAALGRIEQKIDGHIASHD*
Ga0104986_119816	F008130	N/A	MPYGGNTDDKGDAMADAKTYIYEVYTTHLDSQQMVLVQIFRDPETDQVLHAQIAFKDAVGDSWQTPYQLEKK*
Ga0104986_119818	F000722	N/A	MTDAQYPETGITEETRRMYPDNYSDKLGKVYNEMINDMFRPNHVARPEPPDHSNLLDELELLHEAHITIGGQQNRFNASVIRSAINVIRAL*
Ga0104986_11983	F044491	AGGCGG	MSTYTTASKQLISNYACISTLEPTDIALGENITVTGLASPFNGTFKVLDLPQYEFTGVDSTTGEFQFDVNVPRANQIIYAATGSNVEYVVTYAGTVTYTQLCTWITVSDLVTYLGVTISNPSDDYTLATQATNAANVFCYRRRQESGYHDGLSTSPGTDATLGTLMYAAALWRSRGSIETAYAAFDTMGTPTQQSLTPIVKQLLGIPRPAVA*
Ga0104986_11987	F026267	N/A	MMKVKLELDLQDGRGKRIMTTNMFVVCEWEKTENRKVSDGKGIGYSDLACWAYHLCKLAGDPVPDNWREWVKQHPDMDLTSIDETNPNPTALALTDTN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1198

Overview

Ecosystem & Geography

Associated Families

Sequences