Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1186 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1186 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	11885
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (63.64%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

11885

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (63.64%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001459	Metagenome / Metatranscriptome	690	Y
F003112	Metagenome / Metatranscriptome	506	N
F004760	Metagenome / Metatranscriptome	424	N
F010603	Metagenome / Metatranscriptome	301	Y
F039992	Metagenome / Metatranscriptome	162	N
F065530	Metagenome / Metatranscriptome	127	Y
F086661	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_118611	F004760	AGGAG	MPVYQYEDTRNGSVVELERRVDERDSVPRHLKRFTVPQKLTLVGVGEPLENPIGVNQTNLMKGYYRQEQKLGSRFKSRYTPDQIKRAAASQRS*
Ga0104986_118612	F010603	AGGAG	MANEFQRSPIKAKNKAVRIDSQNFTNVIEFTAASSGGTVNTVATAPASLNVTLNGTSYRIALHS*
Ga0104986_118616	F086661	N/A	MKLKNIIKHLDGTIEIRDERTLAEAQEQRIGYAKEDCTKHLYESGIDTATQQNAALGIYEPARCEAIKNYIAACRNEYLRCKGLILAATTNDEADAVQFIPPSVPENL*
Ga0104986_118617	F003112	GGAG	MCKRLAIWLTNLSLRFLMTAQEYACFKEALKFATENNQMVKETKYIGKVKHLLSVNRSIKRIVEEGRNRDEVTDAVVHLAVALKYLEGRGRE*
Ga0104986_118618	F039992	AGGA	VSNDEINDIRDRLALNSERLARIEERQLTLMGMLEKSLSSFGDLANRVTALEHLKTKMLLVAGAIGAIVSLAWDILKSRFSGG*
Ga0104986_11863	F065530	N/A	VIGAILNIIASVLRLIPGWREKRVDRIEGEWRNNRNAIDSDLGPRPWWLRHDSDSGDEYDRGR*
Ga0104986_11867	F001459	N/A	MRTIRAILAFLRNHQWVNEPAWLEEDEKAWTAFLGTPTGKKLSLILLNLTLRHNASAVMKNGDRLAEACGWAKGYRGCVATLESLATQKLNSAIPGYGDGEDEPVAN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1186

Overview

Ecosystem & Geography

Associated Families

Sequences