Scaffold Ga0104986_1147

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1147
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11380
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013502	Metagenome / Metatranscriptome	270	N
F018510	Metagenome / Metatranscriptome	234	Y
F027746	Metagenome	193	Y
F029347	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_114713	F027746	AGG	MTYGIYPNSTPEFRMLQKEDGTMAMQVRYINAPMGYTGKWMDMKTEKENDKTSQSEASSHV*
Ga0104986_114714	F018510	N/A	VYHVNKGEGLPRHEHVYAHLTVCHSGSCVIRKEGIEKVIDKYTQPINLKANEWHEIEALEDETVFVNVFSEGKY*
Ga0104986_114719	F029347	N/A	MLAQGAVGFIKQGCAMLHEGRMELEGAKKTVEGVLADVKAIKGIWQWFIGLLSGKPKSKPTEEAPKPLAQKKTASKKQQSYEEMELLLIKDI
Ga0104986_11472	F013502	AGGA	MALFRCNQSGNVVEFRQDFDIIEMRRHPQYTEVDTSAVVEVEKVDGTRQTLTLKKPMGRPRKEQLL*