Scaffold Ga0104986_1128

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1128
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11168
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (52.63%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F005206	Metagenome / Metatranscriptome	408	Y
F025727	Metagenome / Metatranscriptome	200	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_112816	F001259	AGGAGG	VNSPAFIYVHKTNGLVRVESLDTARNIDGTPEWKHVATINAHIVLENILRATVKERNKIIKHLLS*
Ga0104986_112819	F025727	GGA	MSKHSFPLVESIKVVHLSGERTVRVRRDRTEENLKTNYGDGDIHLVCASQAHDPIEMIKTLARMESVRSVELVD*
Ga0104986_11284	F005206	N/A	MTFKVDRASAEVKPFAGPGEYTVTVNSCKDDGLDKNGNAVATLRYKGPAGEIISDRFVLKDTMMWRLQSLISATEVNIADGDEFDFSVSGAFLRFLQGFVGLSLVIVIEEEKYIDKNGAEQTALRVRRMKKVPVDLDSI*