NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1117

Scaffold Ga0104986_1117


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1117 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)10971
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (73.91%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000141Metagenome / Metatranscriptome1941Y
F004279Metagenome / Metatranscriptome445Y
F006539Metagenome / Metatranscriptome370Y
F010617Metagenome301N
F013887Metagenome / Metatranscriptome267Y
F048985Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0104986_111713F048985GGGGGMPSTSQVTVTTTATLLVTANRADQMVYLHAKHEVYVGGPGVTTSTGYLMDNGDKLSMMLSDNEALYAVATTGSGIMQVMVTIN*
Ga0104986_111714F013887GGAMNDYLAKAINKLKPNAQFSYSDYDYSTIKWDVLDGDAPTQAEIDAAIEQVKAEEAQAEQVKAQAKATAQAKLAALGLTISDLEALGL*
Ga0104986_11173F000141GGAMHAQFKCNGCKRKTEFLWLEQLDTPEGFKAYQCMECGAVGVKNIAEALDIPDSKIDRCKECGGWQFLGSGCHTCALIGAK*
Ga0104986_11174F004279AGGGGGMGYVEILNGSGFTLRMENDKESLKPSMDRCVSCNDDRLLHDGQYLVCTQCHCRQ*
Ga0104986_11177F006539AGTAGGMIETTTPWLVLYMVLAYFIGWGIIATIKENYGQTMYWRGRKDGFDMHRRLTDSKTNADNN
Ga0104986_11179F010617GAGMADTRRKRKKINRRVVRKSPEPLSKLEQHYICMNEIYKAARKAGFNESCALYFVSDRATMPDWVIGDGGIIPSIDPTEEDED*
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