Scaffold Ga0104986_1111

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1111
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10936
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (11.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041193	Metagenome	160	N
F052587	Metagenome / Metatranscriptome	142	N
F052596	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_111114	F052587	N/A	LWFLYSPYNELGIIRSYRIEIDSLNKVNDSLYFDIKKNKVIIDKYTQELNLLENKKQTVIIKYKTKVNEIDSLNNNNLVAEFDSIFSKFNYK*
Ga0104986_111115	F041193	N/A	LTAYSQSLIINNKDTLICFSSDKAKFLAKQYHKAETYYLSDSLCQQQLILKVNQVNLYKKNEDKLQTIIGNQVSIIKFKDEENKSLTIQMKGLSLEVKKQKRLKGISIIFGVSCLVFALVK*
Ga0104986_111120	F052596	N/A	MNYEKFKQIIDLQIAHNKTIDELYKLKIDLSETFDTLGRANDLLWTEVLTENGDYHLCYYLYEMNGMYGTPDLNEEYKDIKELYDYLIENKGFK*