Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1100 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1100 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	10828
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (61.11%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10828

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (61.11%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000888	Metagenome / Metatranscriptome	847	Y
F001150	Metagenome	764	N
F002644	Metagenome / Metatranscriptome	540	Y
F011486	Metagenome	290	Y
F014973	Metagenome / Metatranscriptome	258	N
F097197	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_110013	F097197	GAGG	VPVQTTIKVAGVKDAINGLKKLDPELQKEFKAKATEIAQPAIDAGKAAYEPLENEQHPYALSGMSRSWTSDGKKIFPFKLDKAIKGVQMKFDTRRKAVGVIMILQKDVATAVWETAGRRNTNKLGASLGFVAKDQTRILKPAIEKDIAKVEREIEKITKDAIRTVQRGI*
Ga0104986_110014	F014973	AGGA	MKLKLKVDLNNGSAPVEMTTNMFVICEWERTENRKISDGKGIGYTDLVCWAFHLLKLNGETLPPNYRDWVKQNPNMTIEAIDETNPNPTA*
Ga0104986_11004	F001150	N/A	VLTKHEKSRIAVAIAKSQASANAKWTPEQQQQVDAAIVKMARMKPRFTADEVWYELGASFPVTKGMTARLMVAERRGVIKNTGEITYAKRGGQHDHAQRLTIWQSL*
Ga0104986_11005	F002644	AGG	MTENIDPRTDPQFKALMQVMNDITQNKVPFYEPHELAARSTLRALQHQIDDHNVLDDSDLIDTLNQARIEIKYLCSIITDLHERLKQRDVELGIKQLRLNENEVEIQRLENMVHRAY*
Ga0104986_11007	F011486	N/A	MTKPYVITAQPVVKAPLAGMAKWVELAVKHSDGSLWNNGIWVVRDVRHKPGVISNHARGLATDLSYRWLAQKQFGRQDGRKQSLAYIVKLLEHADTLGIQLVIDYALKRSWKCDRGTWQPLPSVDDGDWYHIEVEPRLAHDVEATKQAFQAVFGVSPKAAPQSV*
Ga0104986_11009	F000888	AGG	MAIQYFAQIDENNVVINVHVVTAEFMAANPERYTGTWVETFFDTPNKTYAGIGYTYNYETQDFTAPVIKVGIE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1100

Overview

Ecosystem & Geography

Associated Families

Sequences